RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 BNIPLQ7Z465 357 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 TERB1Q8NA31 727 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 ZBTB44Q8NCP5 570 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 ATOH1Q92858 354 aaPredicted RBP13.5□□□□□ -0.25
VPS28-216ENST00000533806 NPY6RQ99463 290 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 AGPAT1Q99943 283 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 ARHGEF4Q9NR80 690 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 FAM86C1Q9NVL1 165 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 CLEC4EQ9ULY5 219 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 SLC27A6Q9Y2P4 619 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 STARD13Q9Y3M8 1113 aa13.5□□□□□ -0.25
VPS28-216ENST00000533806 GOLGA6L7A0A1B0GV03 622 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 A0A1W2PQJ5 194 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 PRRT4C9JH25 899 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 ACSL4O60488 711 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 LILRB5O75023 590 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 ATG13O75143 517 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 APODP05090 189 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 TFE3P19532 575 aaPredicted RBP13.49□□□□□ -0.25
VPS28-216ENST00000533806 HOXD9P28356 352 aaPredicted RBP13.49□□□□□ -0.25
VPS28-216ENST00000533806 SLC6A4P31645 630 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 PRKCIP41743 596 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 SLC11A2P49281 568 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 GSCP56915 257 aaPredicted RBP13.49□□□□□ -0.25
VPS28-216ENST00000533806 MRPS21P82921 87 aaKnown RBP13.49□□□□□ -0.25
VPS28-216ENST00000533806 CDK17Q00537 523 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 MPPE1Q53F39 396 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 ZC3H12AQ5D1E8 599 aaKnown RBP13.49□□□□□ -0.25
VPS28-216ENST00000533806 MPP7Q5T2T1 576 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 EMC10Q5UCC4 262 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 PIK3R6Q5UE93 754 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 MMS22LQ6ZRQ5 1243 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 SYT13Q7L8C5 426 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 PHF13Q86YI8 300 aaPredicted RBP13.49□□□□□ -0.25
VPS28-216ENST00000533806 IL17RCQ8NAC3 791 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 RPLP0P6Q8NHW5 317 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 CCDC26Q8TAB7 109 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 SLC30A5Q8TAD4 765 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 KCNV2Q8TDN2 545 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 MYEOVQ96EZ4 313 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 PGAP3Q96FM1 320 aaPredicted RBP13.49□□□□□ -0.25
VPS28-216ENST00000533806 XPO6Q96QU8 1125 aaKnown RBP13.49□□□□□ -0.25
VPS28-216ENST00000533806 FAM126AQ9BYI3 521 aaPredicted RBP13.49□□□□□ -0.25
VPS28-216ENST00000533806 SLC2A11Q9BYW1 496 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 SYNCQ9H7C4 482 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 DNAJC17Q9NVM6 304 aaKnown RBP13.49□□□□□ -0.25
VPS28-216ENST00000533806 POLR3BQ9NW08 1133 aaPredicted RBP13.49□□□□□ -0.25
VPS28-216ENST00000533806 PLK2Q9NYY3 685 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 IFNKQ9P0W0 207 aa13.49□□□□□ -0.25
VPS28-216ENST00000533806 XPO7Q9UIA9 1087 aaKnown RBP13.49□□□□□ -0.25
VPS28-216ENST00000533806 TCRBV5S1A1TA0A578 114 aa13.48□□□□□ -0.25
VPS28-216ENST00000533806 FAM170AA1A519 330 aa13.48□□□□□ -0.25
VPS28-216ENST00000533806 CCDC172P0C7W6 258 aa13.48□□□□□ -0.25
VPS28-216ENST00000533806 FLT3P36888 993 aa13.48□□□□□ -0.25
VPS28-216ENST00000533806 SGSHP51688 502 aa13.48□□□□□ -0.25
VPS28-216ENST00000533806 KDSRQ06136 332 aa13.48□□□□□ -0.25
VPS28-216ENST00000533806 DMWDQ09019 674 aa13.48□□□□□ -0.25
VPS28-216ENST00000533806 PPP2R5DQ14738 602 aa13.48□□□□□ -0.25
VPS28-216ENST00000533806 PREPLQ4J6C6 727 aaPredicted RBP13.48□□□□□ -0.25
VPS28-216ENST00000533806 ARTNQ5T4W7 220 aa13.48□□□□□ -0.25
VPS28-216ENST00000533806 GRAMD4Q6IC98 578 aa13.48□□□□□ -0.25
VPS28-216ENST00000533806 RFWD3Q6PCD5 774 aa13.48□□□□□ -0.25
VPS28-216ENST00000533806 MON1BQ7L1V2 547 aa13.48□□□□□ -0.25
VPS28-216ENST00000533806 KIAA0907Q7Z7F0 614 aaPredicted RBP13.48□□□□□ -0.25
VPS28-216ENST00000533806 BHMTQ93088 406 aa13.48□□□□□ -0.25
VPS28-216ENST00000533806 TMA16Q96EY4 203 aaKnown RBP13.48□□□□□ -0.25
VPS28-216ENST00000533806 BTN2A3PQ96KV6 586 aa13.48□□□□□ -0.25
VPS28-216ENST00000533806 PRICKLE1Q96MT3 831 aaPredicted RBP13.48□□□□□ -0.25
VPS28-216ENST00000533806 PRMT1Q99873 361 aaKnown RBP13.48□□□□□ -0.25
VPS28-216ENST00000533806 NUP58Q9BVL2 599 aa13.48□□□□□ -0.25
VPS28-216ENST00000533806 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.48□□□□□ -0.25
VPS28-216ENST00000533806 ZSCAN32Q9NX65 697 aa13.48□□□□□ -0.25
VPS28-216ENST00000533806 RRN3Q9NYV6 651 aa13.48□□□□□ -0.25
VPS28-216ENST00000533806 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.48□□□□□ -0.25
VPS28-216ENST00000533806 PCDHGA2Q9Y5H1 932 aa13.48□□□□□ -0.25
VPS28-216ENST00000533806 MYOFQ9NZM1 2061 aa13.48□□□□□ -0.25
VPS28-216ENST00000533806 TBC1D3BA6NDS4 549 aa13.47□□□□□ -0.25
VPS28-216ENST00000533806 I6L893 689 aaPredicted RBP13.47□□□□□ -0.25
VPS28-216ENST00000533806 TSPAN3O60637 253 aa13.47□□□□□ -0.25
VPS28-216ENST00000533806 ENDOD1O94919 500 aa13.47□□□□□ -0.25
VPS28-216ENST00000533806 CYBBP04839 570 aa13.47□□□□□ -0.25
VPS28-216ENST00000533806 DGKGP49619 791 aa13.47□□□□□ -0.25
VPS28-216ENST00000533806 CXCR3P49682 368 aa13.47□□□□□ -0.25
VPS28-216ENST00000533806 SEC13P55735 322 aa13.47□□□□□ -0.25
VPS28-216ENST00000533806 SLC25A52Q3SY17 297 aa13.47□□□□□ -0.25
VPS28-216ENST00000533806 HSF5Q4G112 596 aaPredicted RBP13.47□□□□□ -0.25
VPS28-216ENST00000533806 C2orf27AQ580R0 203 aa13.47□□□□□ -0.25
VPS28-216ENST00000533806 FAM102AQ5T9C2 384 aaPredicted RBP13.47□□□□□ -0.25
VPS28-216ENST00000533806 HGSNATQ68CP4 663 aa13.47□□□□□ -0.25
VPS28-216ENST00000533806 ZNF571Q7Z3V5 609 aaPredicted RBP13.47□□□□□ -0.25
VPS28-216ENST00000533806 MSANTD4Q8NCY6 345 aa13.47□□□□□ -0.25
VPS28-216ENST00000533806 SYN2Q92777 582 aaPredicted RBP13.47□□□□□ -0.25
VPS28-216ENST00000533806 FAM122AQ96E09 287 aa13.47□□□□□ -0.25
VPS28-216ENST00000533806 LMLNQ96KR4 655 aa13.47□□□□□ -0.25
VPS28-216ENST00000533806 XPO4Q9C0E2 1151 aaKnown RBP13.47□□□□□ -0.25
VPS28-216ENST00000533806 HAUS4Q9H6D7 363 aa13.47□□□□□ -0.25
VPS28-216ENST00000533806 CD248Q9HCU0 757 aa13.47□□□□□ -0.25
VPS28-216ENST00000533806 ANLNQ9NQW6 1124 aa13.47□□□□□ -0.25
VPS28-216ENST00000533806 PIGVQ9NUD9 493 aa13.47□□□□□ -0.25
VPS28-216ENST00000533806 DDIT4Q9NX09 232 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms