RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 APODP05090 189 aa20.64■□□□□ 0.89
CPSF1-209ENST00000532725 TPM3P06753 285 aa20.64■□□□□ 0.89
CPSF1-209ENST00000532725 CHRM1P11229 460 aaPredicted RBP20.64■□□□□ 0.89
CPSF1-209ENST00000532725 SKILP12757 684 aa20.64■□□□□ 0.89
CPSF1-209ENST00000532725 TNFRSF4P43489 277 aa20.64■□□□□ 0.89
CPSF1-209ENST00000532725 NSFP46459 744 aaKnown RBP20.64■□□□□ 0.89
CPSF1-209ENST00000532725 ZBED6P86452 979 aa20.64■□□□□ 0.89
CPSF1-209ENST00000532725 FAM133BQ5BKY9 247 aaKnown RBP20.64■□□□□ 0.89
CPSF1-209ENST00000532725 NADSYN1Q6IA69 706 aa20.64■□□□□ 0.89
CPSF1-209ENST00000532725 ACAD10Q6JQN1 1059 aa20.64■□□□□ 0.89
CPSF1-209ENST00000532725 PHLDB2Q86SQ0 1253 aa20.64■□□□□ 0.89
CPSF1-209ENST00000532725 TMA16Q96EY4 203 aaKnown RBP20.64■□□□□ 0.89
CPSF1-209ENST00000532725 C11orf70Q9BRQ4 267 aa20.64■□□□□ 0.89
CPSF1-209ENST00000532725 ADAM33Q9BZ11 813 aa20.64■□□□□ 0.89
CPSF1-209ENST00000532725 IRF2BPLQ9H1B7 796 aa20.64■□□□□ 0.89
CPSF1-209ENST00000532725 NUCKS1Q9H1E3 243 aaKnown RBP20.64■□□□□ 0.89
CPSF1-209ENST00000532725 PRMT8Q9NR22 394 aaPredicted RBP20.64■□□□□ 0.89
CPSF1-209ENST00000532725 SEPT11Q9NVA2 429 aaKnown RBP20.64■□□□□ 0.89
CPSF1-209ENST00000532725 DNAJC17Q9NVM6 304 aaKnown RBP20.64■□□□□ 0.89
CPSF1-209ENST00000532725 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.64■□□□□ 0.89
CPSF1-209ENST00000532725 DDIT4Q9NX09 232 aa20.64■□□□□ 0.89
CPSF1-209ENST00000532725 RRN3Q9NYV6 651 aa20.64■□□□□ 0.89
CPSF1-209ENST00000532725 ADAM22Q9P0K1 906 aa20.64■□□□□ 0.89
CPSF1-209ENST00000532725 CALCOCO1Q9P1Z2 691 aa20.64■□□□□ 0.89
CPSF1-209ENST00000532725 FBXO4Q9UKT5 387 aa20.64■□□□□ 0.89
CPSF1-209ENST00000532725 M0QYT0 321 aa20.63■□□□□ 0.89
CPSF1-209ENST00000532725 TSPAN3O60637 253 aa20.63■□□□□ 0.89
CPSF1-209ENST00000532725 CYBBP04839 570 aa20.63■□□□□ 0.89
CPSF1-209ENST00000532725 GYPCP04921 128 aa20.63■□□□□ 0.89
CPSF1-209ENST00000532725 SP9P0CG40 484 aa20.63■□□□□ 0.89
CPSF1-209ENST00000532725 TFE3P19532 575 aaPredicted RBP20.63■□□□□ 0.89
CPSF1-209ENST00000532725 SLC6A4P31645 630 aa20.63■□□□□ 0.89
CPSF1-209ENST00000532725 FLT3P36888 993 aa20.63■□□□□ 0.89
CPSF1-209ENST00000532725 CXCL12P48061 93 aa20.63■□□□□ 0.89
CPSF1-209ENST00000532725 CCR3P51677 355 aa20.63■□□□□ 0.89
CPSF1-209ENST00000532725 GSCP56915 257 aaPredicted RBP20.63■□□□□ 0.89
CPSF1-209ENST00000532725 KDSRQ06136 332 aa20.63■□□□□ 0.89
CPSF1-209ENST00000532725 KLHL30Q0D2K2 578 aa20.63■□□□□ 0.89
CPSF1-209ENST00000532725 PREPLQ4J6C6 727 aaPredicted RBP20.63■□□□□ 0.89
CPSF1-209ENST00000532725 MPPE1Q53F39 396 aa20.63■□□□□ 0.89
CPSF1-209ENST00000532725 PIK3R6Q5UE93 754 aa20.63■□□□□ 0.89
CPSF1-209ENST00000532725 OTUD1Q5VV17 481 aaPredicted RBP20.63■□□□□ 0.89
CPSF1-209ENST00000532725 TRNP1Q6NT89 227 aa20.63■□□□□ 0.89
CPSF1-209ENST00000532725 RFWD3Q6PCD5 774 aa20.63■□□□□ 0.89
CPSF1-209ENST00000532725 MON1BQ7L1V2 547 aa20.63■□□□□ 0.89
CPSF1-209ENST00000532725 CCDC26Q8TAB7 109 aa20.63■□□□□ 0.89
CPSF1-209ENST00000532725 USP33Q8TEY7 942 aa20.63■□□□□ 0.89
CPSF1-209ENST00000532725 DDI1Q8WTU0 396 aa20.63■□□□□ 0.89
CPSF1-209ENST00000532725 IRX2Q9BZI1 471 aaPredicted RBP20.63■□□□□ 0.89
CPSF1-209ENST00000532725 FAM204AQ9H8W3 233 aa20.63■□□□□ 0.89
CPSF1-209ENST00000532725 TAS2R14Q9NYV8 317 aa20.63■□□□□ 0.89
CPSF1-209ENST00000532725 XPO7Q9UIA9 1087 aaKnown RBP20.63■□□□□ 0.89
CPSF1-209ENST00000532725 CLEC4EQ9ULY5 219 aa20.63■□□□□ 0.89
CPSF1-209ENST00000532725 LUC7L2Q9Y383 392 aaKnown RBP20.63■□□□□ 0.89
CPSF1-209ENST00000532725 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.63■□□□□ 0.89
CPSF1-209ENST00000532725 TBC1D3BA6NDS4 549 aa20.62■□□□□ 0.89
CPSF1-209ENST00000532725 ATG13O75143 517 aa20.62■□□□□ 0.89
CPSF1-209ENST00000532725 CALB1P05937 261 aa20.62■□□□□ 0.89
CPSF1-209ENST00000532725 SLC2A3P11169 496 aa20.62■□□□□ 0.89
CPSF1-209ENST00000532725 SATB1Q01826 763 aa20.62■□□□□ 0.89
CPSF1-209ENST00000532725 CSTF1Q05048 431 aaKnown RBP20.62■□□□□ 0.89
CPSF1-209ENST00000532725 C1QBPQ07021 282 aaKnown RBP20.62■□□□□ 0.89
CPSF1-209ENST00000532725 SLC25A52Q3SY17 297 aa20.62■□□□□ 0.89
CPSF1-209ENST00000532725 EMC10Q5UCC4 262 aa20.62■□□□□ 0.89
CPSF1-209ENST00000532725 HGSNATQ68CP4 663 aa20.62■□□□□ 0.89
CPSF1-209ENST00000532725 GRAMD4Q6IC98 578 aa20.62■□□□□ 0.89
CPSF1-209ENST00000532725 PGAP3Q96FM1 320 aaPredicted RBP20.62■□□□□ 0.89
CPSF1-209ENST00000532725 BTN2A3PQ96KV6 586 aa20.62■□□□□ 0.89
CPSF1-209ENST00000532725 SYNJ2BP-COX16A0A087WUM0 186 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 TCRBV5S1A1TA0A578 114 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 DDX3XO00571 662 aaKnown RBP eCLIP20.61■□□□□ 0.89
CPSF1-209ENST00000532725 AP5Z1O43299 807 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 PAPSS2O95340 614 aaPredicted RBP20.61■□□□□ 0.89
CPSF1-209ENST00000532725 APOEP02649 317 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 GZMAP12544 262 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 TDGF1P13385 188 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 HOXD9P28356 352 aaPredicted RBP20.61■□□□□ 0.89
CPSF1-209ENST00000532725 CASP14P31944 242 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 CCR1P32246 355 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 KIR2DL1P43626 348 aaPredicted RBP20.61■□□□□ 0.89
CPSF1-209ENST00000532725 DGKGP49619 791 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 SGSHP51688 502 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 NHLH1Q02575 133 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 NME3Q13232 169 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 PPP2R5DQ14738 602 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 ZNF528Q3MIS6 628 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 MPP7Q5T2T1 576 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 SPECC1LQ69YQ0 1117 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 TSSK4Q6SA08 328 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 BNIPLQ7Z465 357 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 MCOLN2Q8IZK6 566 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 TERB1Q8NA31 727 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 RPLP0P6Q8NHW5 317 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 NELL1Q92832 810 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 ATOH1Q92858 354 aaPredicted RBP20.61■□□□□ 0.89
CPSF1-209ENST00000532725 MYEOVQ96EZ4 313 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 DDX50Q9BQ39 737 aaKnown RBP20.61■□□□□ 0.89
CPSF1-209ENST00000532725 SLC2A11Q9BYW1 496 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 RBSNQ9H1K0 784 aa20.61■□□□□ 0.89
CPSF1-209ENST00000532725 METTL5Q9NRN9 209 aaKnown RBP20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms