RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 ACSL4O60488 711 aa15.63■□□□□ 0.09
CPSF1-208ENST00000532560 APOEP02649 317 aa15.63■□□□□ 0.09
CPSF1-208ENST00000532560 CHRM1P11229 460 aaPredicted RBP15.63■□□□□ 0.09
CPSF1-208ENST00000532560 GBP1P32455 592 aa15.63■□□□□ 0.09
CPSF1-208ENST00000532560 PRKCIP41743 596 aa15.63■□□□□ 0.09
CPSF1-208ENST00000532560 MATKP42679 507 aa15.63■□□□□ 0.09
CPSF1-208ENST00000532560 TNFRSF4P43489 277 aa15.63■□□□□ 0.09
CPSF1-208ENST00000532560 CXCL12P48061 93 aa15.63■□□□□ 0.09
CPSF1-208ENST00000532560 ASIC2Q16515 512 aa15.63■□□□□ 0.09
CPSF1-208ENST00000532560 MPPE1Q53F39 396 aa15.63■□□□□ 0.09
CPSF1-208ENST00000532560 C2CD6Q53TS8 623 aa15.63■□□□□ 0.09
CPSF1-208ENST00000532560 FAM133BQ5BKY9 247 aaKnown RBP15.63■□□□□ 0.09
CPSF1-208ENST00000532560 SFMBT2Q5VUG0 894 aa15.63■□□□□ 0.09
CPSF1-208ENST00000532560 E4F1Q66K89 784 aaPredicted RBP15.63■□□□□ 0.09
CPSF1-208ENST00000532560 PKN3Q6P5Z2 889 aa15.63■□□□□ 0.09
CPSF1-208ENST00000532560 ARCQ7LC44 396 aa15.63■□□□□ 0.09
CPSF1-208ENST00000532560 PHF13Q86YI8 300 aaPredicted RBP15.63■□□□□ 0.09
CPSF1-208ENST00000532560 RPLP0P6Q8NHW5 317 aa15.63■□□□□ 0.09
CPSF1-208ENST00000532560 OLIG1Q8TAK6 271 aa15.63■□□□□ 0.09
CPSF1-208ENST00000532560 USP33Q8TEY7 942 aa15.63■□□□□ 0.09
CPSF1-208ENST00000532560 NELL1Q92832 810 aa15.63■□□□□ 0.09
CPSF1-208ENST00000532560 BHMTQ93088 406 aa15.63■□□□□ 0.09
CPSF1-208ENST00000532560 DDX50Q9BQ39 737 aaKnown RBP15.63■□□□□ 0.09
CPSF1-208ENST00000532560 DDIT4Q9NX09 232 aa15.63■□□□□ 0.09
CPSF1-208ENST00000532560 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.63■□□□□ 0.09
CPSF1-208ENST00000532560 FBXO10Q9UK96 956 aa15.63■□□□□ 0.09
CPSF1-208ENST00000532560 STAP1Q9ULZ2 295 aa15.63■□□□□ 0.09
CPSF1-208ENST00000532560 ITIH6Q6UXX5 1313 aa15.63■□□□□ 0.09
CPSF1-208ENST00000532560 ESPNB1AK53 854 aa15.62■□□□□ 0.09
CPSF1-208ENST00000532560 CBFA2T2O43439 604 aa15.62■□□□□ 0.09
CPSF1-208ENST00000532560 SLC2A3P11169 496 aa15.62■□□□□ 0.09
CPSF1-208ENST00000532560 HOXD9P28356 352 aaPredicted RBP15.62■□□□□ 0.09
CPSF1-208ENST00000532560 NBL1P41271 181 aa15.62■□□□□ 0.09
CPSF1-208ENST00000532560 DGKGP49619 791 aa15.62■□□□□ 0.09
CPSF1-208ENST00000532560 CSTF1Q05048 431 aaKnown RBP15.62■□□□□ 0.09
CPSF1-208ENST00000532560 PTP4A2Q12974 167 aa15.62■□□□□ 0.09
CPSF1-208ENST00000532560 ZC3H12AQ5D1E8 599 aaKnown RBP15.62■□□□□ 0.09
CPSF1-208ENST00000532560 OTUD1Q5VV17 481 aaPredicted RBP15.62■□□□□ 0.09
CPSF1-208ENST00000532560 RNF43Q68DV7 783 aa15.62■□□□□ 0.09
CPSF1-208ENST00000532560 NADSYN1Q6IA69 706 aa15.62■□□□□ 0.09
CPSF1-208ENST00000532560 NUDT18Q6ZVK8 323 aa15.62■□□□□ 0.09
CPSF1-208ENST00000532560 MON1BQ7L1V2 547 aa15.62■□□□□ 0.09
CPSF1-208ENST00000532560 SFTPA1Q8IWL2 248 aa15.62■□□□□ 0.09
CPSF1-208ENST00000532560 RNF214Q8ND24 703 aa15.62■□□□□ 0.09
CPSF1-208ENST00000532560 SLC30A5Q8TAD4 765 aa15.62■□□□□ 0.09
CPSF1-208ENST00000532560 DDI1Q8WTU0 396 aa15.62■□□□□ 0.09
CPSF1-208ENST00000532560 NT5C3BQ969T7 300 aa15.62■□□□□ 0.09
CPSF1-208ENST00000532560 BTN2A3PQ96KV6 586 aa15.62■□□□□ 0.09
CPSF1-208ENST00000532560 NPY6RQ99463 290 aa15.62■□□□□ 0.09
CPSF1-208ENST00000532560 C11orf70Q9BRQ4 267 aa15.62■□□□□ 0.09
CPSF1-208ENST00000532560 FAM126AQ9BYI3 521 aaPredicted RBP15.62■□□□□ 0.09
CPSF1-208ENST00000532560 XPO4Q9C0E2 1151 aaKnown RBP15.62■□□□□ 0.09
CPSF1-208ENST00000532560 NUCKS1Q9H1E3 243 aaKnown RBP15.62■□□□□ 0.09
CPSF1-208ENST00000532560 SEPT11Q9NVA2 429 aaKnown RBP15.62■□□□□ 0.09
CPSF1-208ENST00000532560 TMEM51Q9NW97 253 aa15.62■□□□□ 0.09
CPSF1-208ENST00000532560 PLK2Q9NYY3 685 aa15.62■□□□□ 0.09
CPSF1-208ENST00000532560 TMEM59LQ9UK28 342 aa15.62■□□□□ 0.09
CPSF1-208ENST00000532560 SLC27A6Q9Y2P4 619 aa15.62■□□□□ 0.09
CPSF1-208ENST00000532560 FAM170AA1A519 330 aa15.61■□□□□ 0.09
CPSF1-208ENST00000532560 TBC1D3BA6NDS4 549 aa15.61■□□□□ 0.09
CPSF1-208ENST00000532560 GOLGA8SH3BPF8 625 aa15.61■□□□□ 0.09
CPSF1-208ENST00000532560 K7ESF4 209 aa15.61■□□□□ 0.09
CPSF1-208ENST00000532560 CALB1P05937 261 aa15.61■□□□□ 0.09
CPSF1-208ENST00000532560 CISD3P0C7P0 127 aa15.61■□□□□ 0.09
CPSF1-208ENST00000532560 HOXA6P31267 233 aa15.61■□□□□ 0.09
CPSF1-208ENST00000532560 SLC6A4P31645 630 aa15.61■□□□□ 0.09
CPSF1-208ENST00000532560 CCR1P32246 355 aa15.61■□□□□ 0.09
CPSF1-208ENST00000532560 KIR2DL1P43626 348 aaPredicted RBP15.61■□□□□ 0.09
CPSF1-208ENST00000532560 SEC13P55735 322 aa15.61■□□□□ 0.09
CPSF1-208ENST00000532560 MRPS21P82921 87 aaKnown RBP15.61■□□□□ 0.09
CPSF1-208ENST00000532560 C1QBPQ07021 282 aaKnown RBP15.61■□□□□ 0.09
CPSF1-208ENST00000532560 MTA1Q13330 715 aa15.61■□□□□ 0.09
CPSF1-208ENST00000532560 HSF5Q4G112 596 aaPredicted RBP15.61■□□□□ 0.09
CPSF1-208ENST00000532560 C10orf76Q5T2E6 689 aa15.61■□□□□ 0.09
CPSF1-208ENST00000532560 MPP7Q5T2T1 576 aa15.61■□□□□ 0.09
CPSF1-208ENST00000532560 PIK3R6Q5UE93 754 aa15.61■□□□□ 0.09
CPSF1-208ENST00000532560 PPP1R2P3Q6NXS1 205 aa15.61■□□□□ 0.09
CPSF1-208ENST00000532560 ZC3H14Q6PJT7 736 aaKnown RBP15.61■□□□□ 0.09
CPSF1-208ENST00000532560 SYT13Q7L8C5 426 aa15.61■□□□□ 0.09
CPSF1-208ENST00000532560 KCNV2Q8TDN2 545 aa15.61■□□□□ 0.09
CPSF1-208ENST00000532560 SYN2Q92777 582 aaPredicted RBP15.61■□□□□ 0.09
CPSF1-208ENST00000532560 TMA16Q96EY4 203 aaKnown RBP15.61■□□□□ 0.09
CPSF1-208ENST00000532560 PGAP3Q96FM1 320 aaPredicted RBP15.61■□□□□ 0.09
CPSF1-208ENST00000532560 SLC2A11Q9BYW1 496 aa15.61■□□□□ 0.09
CPSF1-208ENST00000532560 FAM86C1Q9NVL1 165 aa15.61■□□□□ 0.09
CPSF1-208ENST00000532560 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.61■□□□□ 0.09
CPSF1-208ENST00000532560 C2orf42Q9NWW7 574 aa15.61■□□□□ 0.09
CPSF1-208ENST00000532560 ADAM22Q9P0K1 906 aa15.61■□□□□ 0.09
CPSF1-208ENST00000532560 PCDHGA2Q9Y5H1 932 aa15.61■□□□□ 0.09
CPSF1-208ENST00000532560 FANCMQ8IYD8 2048 aa15.61■□□□□ 0.09
CPSF1-208ENST00000532560 KCNU1A8MYU2 1149 aa15.6■□□□□ 0.09
CPSF1-208ENST00000532560 M0QYT0 321 aa15.6■□□□□ 0.09
CPSF1-208ENST00000532560 TRIM24O15164 1050 aa15.6■□□□□ 0.09
CPSF1-208ENST00000532560 MOCS2O96007 188 aaPredicted RBP15.6■□□□□ 0.09
CPSF1-208ENST00000532560 FLT3P36888 993 aa15.6■□□□□ 0.09
CPSF1-208ENST00000532560 SULT1E1P49888 294 aa15.6■□□□□ 0.09
CPSF1-208ENST00000532560 SGSHP51688 502 aa15.6■□□□□ 0.09
CPSF1-208ENST00000532560 NRLP54845 237 aa15.6■□□□□ 0.09
CPSF1-208ENST00000532560 RNASE9P60153 205 aaKnown RBP15.6■□□□□ 0.09
CPSF1-208ENST00000532560 ZBED6P86452 979 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms