RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 A6NJR5 290 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 SMIM24O75264 130 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 NPTXRO95502 500 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 GNAT1P11488 350 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 DESP17661 470 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 PAPOLAP51003 745 aaKnown RBP19.87■□□□□ 0.77
VPS28-213ENST00000530983 ALDH18A1P54886 795 aaKnown RBP19.87■□□□□ 0.77
VPS28-213ENST00000530983 ARHGAP1Q07960 439 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 STX3Q13277 289 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 NT5DC4Q86YG4 428 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 CENPIQ92674 756 aaPredicted RBP19.87■□□□□ 0.77
VPS28-213ENST00000530983 CSPG4P5Q96PW8 444 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 KCTD15Q96SI1 283 aaPredicted RBP19.87■□□□□ 0.77
VPS28-213ENST00000530983 PIDD1Q9HB75 910 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 PAPOLBQ9NRJ5 636 aaKnown RBP19.87■□□□□ 0.77
VPS28-213ENST00000530983 ETAA1Q9NY74 926 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 DTLQ9NZJ0 730 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 SLC17A6Q9P2U8 582 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 AP4E1Q9UPM8 1137 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 MFHAS1Q9Y4C4 1052 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 PRR5-ARHGAP8B1AHC4 643 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 F8W8V4 182 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 NR2C2P49116 596 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 RAB27AP51159 221 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 IRX4P78413 519 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 ARHGAP8P85298 464 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 AP1B1Q10567 949 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 WASHC5Q12768 1159 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 LBRQ14739 615 aaKnown RBP19.87■□□□□ 0.77
VPS28-213ENST00000530983 HEATR6Q6AI08 1181 aaKnown RBP19.87■□□□□ 0.77
VPS28-213ENST00000530983 DENND5BQ6ZUT9 1274 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 CYS1Q717R9 158 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 UCMAQ8WVF2 138 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 CLPTM1LQ96KA5 538 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 THAP1Q9NVV9 213 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 ZNF212Q9UDV6 495 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 GTF2IRD1Q9UHL9 959 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 EMCNQ9ULC0 261 aa19.87■□□□□ 0.77
VPS28-213ENST00000530983 WDR27A2RRH5 827 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 TM7SF2O76062 418 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 TOMM70O94826 608 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 SERPINA6P08185 405 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 VAV1P15498 845 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 ZFXP17010 805 aaPredicted RBP19.86■□□□□ 0.77
VPS28-213ENST00000530983 STEAP4Q687X5 459 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 NCBP2-AS2Q69YL0 99 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 IRGCQ6NXR0 463 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 TMEM154Q6P9G4 183 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 ZDHHC17Q8IUH5 632 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 SCUBE1Q8IWY4 988 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 CCDC185Q8N715 623 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 NLRP7Q8WX94 980 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 ZNF778Q96MU6 729 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 ELP3Q9H9T3 547 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 ASB3Q9Y575 518 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 PCNTO95613 3336 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 SDR42E2A6NKP2 422 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 F5H423 210 aaPredicted RBP19.86■□□□□ 0.77
VPS28-213ENST00000530983 SPECC1L-ADORA2AF8WAN1 911 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 ALDH1A2O94788 518 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 ALDOAP04075 364 aaKnown RBP19.86■□□□□ 0.77
VPS28-213ENST00000530983 CNTFP26441 200 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 CRADDP78560 199 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 UBAP2LQ14157 1087 aaKnown RBP19.86■□□□□ 0.77
VPS28-213ENST00000530983 SOWAHAQ2M3V2 549 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 FASTKD1Q53R41 847 aaKnown RBP19.86■□□□□ 0.77
VPS28-213ENST00000530983 CWF19L1Q69YN2 538 aaKnown RBP19.86■□□□□ 0.77
VPS28-213ENST00000530983 KYAT3Q6YP21 454 aaKnown RBP19.86■□□□□ 0.77
VPS28-213ENST00000530983 ULK2Q8IYT8 1036 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 RILPQ96NA2 401 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 DPEP3Q9H4B8 488 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 KRT82Q9NSB4 513 aa19.86■□□□□ 0.77
VPS28-213ENST00000530983 HCRTO43612 131 aa19.85■□□□□ 0.77
VPS28-213ENST00000530983 ATP5BP06576 529 aaKnown RBP19.85■□□□□ 0.77
VPS28-213ENST00000530983 NIPAL4Q0D2K0 466 aa19.85■□□□□ 0.77
VPS28-213ENST00000530983 TBCCQ15814 346 aa19.85■□□□□ 0.77
VPS28-213ENST00000530983 MBLAC2Q68D91 279 aa19.85■□□□□ 0.77
VPS28-213ENST00000530983 C16orf46Q6P387 395 aa19.85■□□□□ 0.77
VPS28-213ENST00000530983 MARK2Q7KZI7 788 aaKnown RBP19.85■□□□□ 0.77
VPS28-213ENST00000530983 SLC26A9Q7LBE3 791 aa19.85■□□□□ 0.77
VPS28-213ENST00000530983 NET1Q7Z628 596 aaPredicted RBP19.85■□□□□ 0.77
VPS28-213ENST00000530983 KBTBD2Q8IY47 623 aa19.85■□□□□ 0.77
VPS28-213ENST00000530983 GPC2Q8N158 579 aa19.85■□□□□ 0.77
VPS28-213ENST00000530983 ZMAT2Q96NC0 199 aaKnown RBP19.85■□□□□ 0.77
VPS28-213ENST00000530983 PANX3Q96QZ0 392 aa19.85■□□□□ 0.77
VPS28-213ENST00000530983 GCOM2Q9BZD3 368 aaPredicted RBP19.85■□□□□ 0.77
VPS28-213ENST00000530983 USP3Q9Y6I4 520 aa19.85■□□□□ 0.77
VPS28-213ENST00000530983 ZNF638Q14966 1978 aaKnown RBP19.85■□□□□ 0.77
VPS28-213ENST00000530983 LYPLA1O75608 230 aaPredicted RBP19.85■□□□□ 0.77
VPS28-213ENST00000530983 SKIP12755 728 aa19.85■□□□□ 0.77
VPS28-213ENST00000530983 GRM5P41594 1212 aa19.85■□□□□ 0.77
VPS28-213ENST00000530983 TUBB3Q13509 450 aa19.85■□□□□ 0.77
VPS28-213ENST00000530983 STXBP5Q5T5C0 1151 aa19.85■□□□□ 0.77
VPS28-213ENST00000530983 RIPOR1Q6ZS17 1223 aa19.85■□□□□ 0.77
VPS28-213ENST00000530983 HTR3CQ8WXA8 447 aa19.85■□□□□ 0.77
VPS28-213ENST00000530983 OLFM3Q96PB7 478 aa19.85■□□□□ 0.77
VPS28-213ENST00000530983 THTPAQ9BU02 230 aa19.85■□□□□ 0.77
VPS28-213ENST00000530983 SLC7A8Q9UHI5 535 aa19.85■□□□□ 0.77
VPS28-213ENST00000530983 RALGAPA2Q2PPJ7 1873 aa19.85■□□□□ 0.77
VPS28-213ENST00000530983 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms