RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 TMEM63AO94886 807 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 LAG3P18627 525 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 KRT4P19013 534 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 CHMP24386 653 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 RBL1P28749 1068 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 PPIFP30405 207 aaKnown RBP3.64□□□□□ -1.83
CD44-229ENST00000528672 UQCRC1P31930 480 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 PTH2RP49190 550 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 ANXA11P50995 505 aaKnown RBP3.64□□□□□ -1.83
CD44-229ENST00000528672 CCR9P51686 369 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 VAV2P52735 878 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 DRG2P55039 364 aaKnown RBP3.64□□□□□ -1.83
CD44-229ENST00000528672 ARF3P61204 181 aaPredicted RBP3.64□□□□□ -1.83
CD44-229ENST00000528672 ARF1P84077 181 aaKnown RBP3.64□□□□□ -1.83
CD44-229ENST00000528672 TAP2Q03519 686 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 SF3A3Q12874 501 aaKnown RBP eCLIP3.64□□□□□ -1.83
CD44-229ENST00000528672 PDCLQ13371 301 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 GPR68Q15743 365 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 BAK1Q16611 211 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 PREPLQ4J6C6 727 aaPredicted RBP3.64□□□□□ -1.83
CD44-229ENST00000528672 HSP90AB3PQ58FF7 597 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 WDR45BQ5MNZ6 344 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 LY6G5CQ5SRR4 150 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 CERCAMQ5T4B2 595 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 FAM205BPQ63HN1 556 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 SLC9A4Q6AI14 798 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 SFRP4Q6FHJ7 346 aaPredicted RBP3.64□□□□□ -1.83
CD44-229ENST00000528672 DGAT2L7PQ6IED9 249 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 FOXR2Q6PJQ5 311 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 CLEC9AQ6UXN8 241 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 CCDC129Q6ZRS4 1044 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 LRRC8DQ7L1W4 858 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 RASGRP2Q7LDG7 609 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 R3HCC1LQ7Z5L2 792 aaKnown RBP3.64□□□□□ -1.83
CD44-229ENST00000528672 TRABD2AQ86V40 505 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 ARMC8Q8IUR7 673 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 FSTL5Q8N475 847 aaPredicted RBP3.64□□□□□ -1.83
CD44-229ENST00000528672 ZMIZ2Q8NF64 920 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 TOR1AIP2Q8NFQ8 470 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 SUN3Q8TAQ9 357 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 ATRIPQ8WXE1 791 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 FUBP1Q96AE4 644 aaKnown RBP3.64□□□□□ -1.83
CD44-229ENST00000528672 HAPLN3Q96S86 360 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 CENPOQ9BU64 300 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 ACTRT3Q9BYD9 372 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 TPSD1Q9BZJ3 242 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 LMAN2LQ9H0V9 348 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 CCDC134Q9H6E4 229 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 PRKRIP1Q9H875 184 aaPredicted RBP3.64□□□□□ -1.83
CD44-229ENST00000528672 TMLHEQ9NVH6 421 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 TMEM51Q9NW97 253 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 NSMCE4AQ9NXX6 385 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 ING1Q9UK53 422 aaPredicted RBP3.64□□□□□ -1.83
CD44-229ENST00000528672 ST3GAL5Q9UNP4 418 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 CNPY2Q9Y2B0 182 aa3.64□□□□□ -1.83
CD44-229ENST00000528672 REXO2Q9Y3B8 237 aaKnown RBP3.64□□□□□ -1.83
CD44-229ENST00000528672 TDRD9Q8NDG6 1382 aaKnown RBP3.63□□□□□ -1.83
CD44-229ENST00000528672 FNDC1Q4ZHG4 1894 aaPredicted RBP3.63□□□□□ -1.83
CD44-229ENST00000528672 A0A1W2PS29 197 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 FAM90A20PA6NIJ5 464 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 SAC3D1A6NKF1 404 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 TMEM200CA6NKL6 621 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 ZAR1LA6NP61 321 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 DOK2O60496 412 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 FESP07332 822 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 FAM200BP0CF97 657 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 ABCD3P28288 659 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 PCSK6P29122 969 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 EPHA3P29320 983 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 PSMC2P35998 433 aaKnown RBP3.63□□□□□ -1.83
CD44-229ENST00000528672 PAFAH1B1P43034 410 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 GSTM5P46439 218 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 MTHFSP49914 203 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 TGFB2P61812 414 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 RPP30P78346 268 aaKnown RBP3.63□□□□□ -1.83
CD44-229ENST00000528672 GALNT2Q10471 571 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 TUBB3Q13509 450 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 ERV3-1Q14264 604 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 MEA1Q16626 185 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 TBRG1Q3YBR2 411 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 FAM133BQ5BKY9 247 aaKnown RBP3.63□□□□□ -1.83
CD44-229ENST00000528672 CFAP58Q5T655 872 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 NAA35Q5VZE5 725 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 ANO7Q6IWH7 933 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 PDXDC1Q6P996 788 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 SYNE3Q6ZMZ3 975 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 B4GALNT4Q76KP1 1039 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 CLNKQ7Z7G1 428 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 GALNT5Q7Z7M9 940 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.63□□□□□ -1.83
CD44-229ENST00000528672 ANKRD44Q8N8A2 993 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 FSIP1Q8NA03 581 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 BEND2Q8NDZ0 799 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 TBC1D22AQ8WUA7 517 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 SNX19Q92543 992 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 LARP4BQ92615 738 aaKnown RBP3.63□□□□□ -1.83
CD44-229ENST00000528672 GLG1Q92896 1179 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 R3HDM4Q96D70 268 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 KTI12Q96EK9 354 aaPredicted RBP3.63□□□□□ -1.83
CD44-229ENST00000528672 PTCD3Q96EY7 689 aaKnown RBP3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms