RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 WDR59Q6PJI9 974 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 CXCL17Q6UXB2 119 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 CRELD2Q6UXH1 353 aaPredicted RBP4.44□□□□□ -1.7
CD44-226ENST00000527889 GBP6Q6ZN66 633 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 INTS8Q75QN2 995 aaKnown RBP4.44□□□□□ -1.7
CD44-226ENST00000527889 RRAGAQ7L523 313 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 CHST15Q7LFX5 561 aaPredicted RBP4.44□□□□□ -1.7
CD44-226ENST00000527889 CACNA2D4Q7Z3S7 1137 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 OSTM1Q86WC4 334 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 CPNE8Q86YQ8 564 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 KIAA0319LQ8IZA0 1049 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 CCAR2Q8N163 923 aaKnown RBP4.44□□□□□ -1.7
CD44-226ENST00000527889 CHCHD4Q8N4Q1 142 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 KIAA1958Q8N8K9 716 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 ACRBPQ8NEB7 543 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 OR8K1Q8NGG5 319 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 RAET1EQ8TD07 263 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 DNAJB3Q8WWF6 145 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 ATRIPQ8WXE1 791 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 JADE3Q92613 823 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 CCDC51Q96ER9 411 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 ERO1AQ96HE7 468 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 C16orf45Q96MC5 204 aaPredicted RBP4.44□□□□□ -1.7
CD44-226ENST00000527889 MFSD14AQ96MC6 490 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 FAM210AQ96ND0 272 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 PTCHD1Q96NR3 888 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 GUCD1Q96NT3 240 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 TAAR9Q96RI9 348 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 MAP7D2Q96T17 732 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 ELF4Q99607 663 aaPredicted RBP4.44□□□□□ -1.7
CD44-226ENST00000527889 KCNJ15Q99712 375 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 ACO2Q99798 780 aaKnown RBP4.44□□□□□ -1.7
CD44-226ENST00000527889 TCHPQ9BT92 498 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 NUP58Q9BVL2 599 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 ZDHHC5Q9C0B5 715 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 INTS2Q9H0H0 1204 aaKnown RBP4.44□□□□□ -1.7
CD44-226ENST00000527889 UPF3AQ9H1J1 476 aaKnown RBP4.44□□□□□ -1.7
CD44-226ENST00000527889 YY1AP1Q9H869 796 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 ZMAT4Q9H898 229 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 PPCSQ9HAB8 311 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 PDE11AQ9HCR9 933 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 XPNPEP3Q9NQH7 507 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 CEP72Q9P209 647 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 RALYQ9UKM9 306 aaKnown RBP4.44□□□□□ -1.7
CD44-226ENST00000527889 AGO2Q9UKV8 859 aaKnown RBP4.44□□□□□ -1.7
CD44-226ENST00000527889 PHTF1Q9UMS5 762 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 GINS2Q9Y248 185 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 Q9Y3F1 56 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 GPR179Q6PRD1 2367 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 PTPRJQ12913 1337 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 NRCAMQ92823 1304 aa4.44□□□□□ -1.7
CD44-226ENST00000527889 BRWD1Q9NSI6 2320 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 CHD6Q8TD26 2715 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 ANKRD12Q6UB98 2062 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 A0A0B4J269 797 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 A0A1W2PPC1 479 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 A0A1W2PQJ5 194 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 FAM170AA1A519 330 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 C17orf102A2RUQ5 167 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 GTPBP10A4D1E9 387 aaKnown RBP4.43□□□□□ -1.7
CD44-226ENST00000527889 MBLAC1A4D2B0 266 aaPredicted RBP4.43□□□□□ -1.7
CD44-226ENST00000527889 ZNF233A6NK53 670 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 A6NNZ2 444 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 ACKR2O00590 384 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 CLDN3O15551 220 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 AP1G1O43747 822 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 FAM189A1O60320 539 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 N4BP1O75113 896 aaKnown RBP4.43□□□□□ -1.7
CD44-226ENST00000527889 ADAMTS4O75173 837 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 TOM1L1O75674 476 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 SYPP08247 313 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 PNMA6AP0CW24 399 aaPredicted RBP4.43□□□□□ -1.7
CD44-226ENST00000527889 COL6A1P12109 1028 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 UCHL3P15374 230 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 ARF4P18085 180 aaPredicted RBP4.43□□□□□ -1.7
CD44-226ENST00000527889 MAP4P27816 1152 aaKnown RBP4.43□□□□□ -1.7
CD44-226ENST00000527889 ABCD1P33897 745 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 MXI1P50539 228 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 RPL11P62913 178 aaKnown RBP4.43□□□□□ -1.7
CD44-226ENST00000527889 ADAM17P78536 824 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 IRF9Q00978 393 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 SATB1Q01826 763 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 ZNF267Q14586 743 aaPredicted RBP4.43□□□□□ -1.7
CD44-226ENST00000527889 PSMD6Q15008 389 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 ACAP2Q15057 778 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 CLUL1Q15846 466 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 KCNA10Q16322 511 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 MEA1Q16626 185 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 FAM187BQ17R55 369 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 TMEM95Q3KNT9 176 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 ATF7IP2Q5U623 682 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 KLHDC7AQ5VTJ3 777 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 SFMBT2Q5VUG0 894 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 SLFN12LQ6IEE8 588 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 FBXO46Q6PJ61 603 aaPredicted RBP4.43□□□□□ -1.7
CD44-226ENST00000527889 TRIM65Q6PJ69 517 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 MPZL3Q6UWV2 235 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 CYP26C1Q6V0L0 522 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 ZPBP2Q6X784 338 aa4.43□□□□□ -1.7
CD44-226ENST00000527889 UBE2Q1Q7Z7E8 422 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms