RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 OSBPL2Q9H1P3 480 aa21.78■■□□□ 1.08
VPS28-208ENST00000527797 MARCH2Q9P0N8 246 aa21.78■■□□□ 1.08
VPS28-208ENST00000527797 SAE1Q9UBE0 346 aaPredicted RBP21.78■■□□□ 1.08
VPS28-208ENST00000527797 DNPEPQ9ULA0 475 aa21.78■■□□□ 1.08
VPS28-208ENST00000527797 MYO16Q9Y6X6 1858 aa21.77■■□□□ 1.08
VPS28-208ENST00000527797 CCDC151A5D8V7 595 aa21.77■■□□□ 1.08
VPS28-208ENST00000527797 TLR5O60602 858 aa21.77■■□□□ 1.08
VPS28-208ENST00000527797 ERLIN1O75477 346 aa21.77■■□□□ 1.08
VPS28-208ENST00000527797 TBX18O95935 607 aa21.77■■□□□ 1.08
VPS28-208ENST00000527797 GAS8O95995 478 aa21.77■■□□□ 1.08
VPS28-208ENST00000527797 LRG1P02750 347 aa21.77■■□□□ 1.08
VPS28-208ENST00000527797 HCAR3P49019 387 aa21.77■■□□□ 1.08
VPS28-208ENST00000527797 CCNI2Q6ZMN8 369 aaPredicted RBP21.77■■□□□ 1.08
VPS28-208ENST00000527797 SYDE1Q6ZW31 735 aaPredicted RBP21.77■■□□□ 1.08
VPS28-208ENST00000527797 SLC35B2Q8TB61 432 aa21.77■■□□□ 1.08
VPS28-208ENST00000527797 SLC39A13Q96H72 371 aa21.77■■□□□ 1.08
VPS28-208ENST00000527797 HAPLN3Q96S86 360 aa21.77■■□□□ 1.08
VPS28-208ENST00000527797 TRIM51Q9BSJ1 452 aa21.77■■□□□ 1.08
VPS28-208ENST00000527797 CCSER2Q9H7U1 834 aa21.77■■□□□ 1.08
VPS28-208ENST00000527797 ZNF148Q9UQR1 794 aa21.77■■□□□ 1.08
VPS28-208ENST00000527797 YBX2Q9Y2T7 364 aaKnown RBP21.77■■□□□ 1.08
VPS28-208ENST00000527797 PLXNA4Q9HCM2 1894 aa21.77■■□□□ 1.08
VPS28-208ENST00000527797 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.77■■□□□ 1.07
VPS28-208ENST00000527797 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.77■■□□□ 1.07
VPS28-208ENST00000527797 ZSCAN5CA6NGD5 496 aaPredicted RBP21.77■■□□□ 1.07
VPS28-208ENST00000527797 DAPK3O43293 454 aa21.77■■□□□ 1.07
VPS28-208ENST00000527797 AMPD1P23109 780 aa21.77■■□□□ 1.07
VPS28-208ENST00000527797 VCPP55072 806 aaKnown RBP21.77■■□□□ 1.07
VPS28-208ENST00000527797 SEMA3BQ13214 749 aa21.77■■□□□ 1.07
VPS28-208ENST00000527797 PPP1R7Q15435 360 aa21.77■■□□□ 1.07
VPS28-208ENST00000527797 TRIP4Q15650 581 aaPredicted RBP21.77■■□□□ 1.07
VPS28-208ENST00000527797 HECTD3Q5T447 861 aa21.77■■□□□ 1.07
VPS28-208ENST00000527797 PDE12Q6L8Q7 609 aaKnown RBP21.77■■□□□ 1.07
VPS28-208ENST00000527797 C1orf228Q6PIY5 440 aa21.77■■□□□ 1.07
VPS28-208ENST00000527797 RFX8Q6ZV50 586 aa21.77■■□□□ 1.07
VPS28-208ENST00000527797 MIB1Q86YT6 1006 aa21.77■■□□□ 1.07
VPS28-208ENST00000527797 EPAS1Q99814 870 aa21.77■■□□□ 1.07
VPS28-208ENST00000527797 ERP44Q9BS26 406 aa21.77■■□□□ 1.07
VPS28-208ENST00000527797 OR12D3Q9UGF7 316 aa21.77■■□□□ 1.07
VPS28-208ENST00000527797 SLC12A8A0AV02 714 aa21.76■■□□□ 1.07
VPS28-208ENST00000527797 ESYT3A0FGR9 886 aa21.76■■□□□ 1.07
VPS28-208ENST00000527797 KCNU1A8MYU2 1149 aa21.76■■□□□ 1.07
VPS28-208ENST00000527797 FAM72CH0Y354 149 aa21.76■■□□□ 1.07
VPS28-208ENST00000527797 H3BNC9 293 aa21.76■■□□□ 1.07
VPS28-208ENST00000527797 C8AP07357 584 aa21.76■■□□□ 1.07
VPS28-208ENST00000527797 PECAM1P16284 738 aaPredicted RBP21.76■■□□□ 1.07
VPS28-208ENST00000527797 TNFRSF8P28908 595 aa21.76■■□□□ 1.07
VPS28-208ENST00000527797 ATP5C1P36542 298 aaKnown RBP21.76■■□□□ 1.07
VPS28-208ENST00000527797 KPNA1P52294 538 aaPredicted RBP21.76■■□□□ 1.07
VPS28-208ENST00000527797 TPI1P60174 286 aa21.76■■□□□ 1.07
VPS28-208ENST00000527797 GPM6BQ13491 265 aa21.76■■□□□ 1.07
VPS28-208ENST00000527797 CAMK1Q14012 370 aa21.76■■□□□ 1.07
VPS28-208ENST00000527797 NOMO1Q15155 1222 aa21.76■■□□□ 1.07
VPS28-208ENST00000527797 FAM72AQ5TYM5 149 aa21.76■■□□□ 1.07
VPS28-208ENST00000527797 FAM72DQ6L9T8 149 aa21.76■■□□□ 1.07
VPS28-208ENST00000527797 NPNTQ6UXI9 565 aa21.76■■□□□ 1.07
VPS28-208ENST00000527797 GSTA5Q7RTV2 222 aa21.76■■□□□ 1.07
VPS28-208ENST00000527797 FAM72BQ86X60 149 aa21.76■■□□□ 1.07
VPS28-208ENST00000527797 CASKIN2Q8WXE0 1202 aa21.76■■□□□ 1.07
VPS28-208ENST00000527797 FCRL2Q96LA5 508 aaPredicted RBP21.76■■□□□ 1.07
VPS28-208ENST00000527797 GDF15Q99988 308 aa21.76■■□□□ 1.07
VPS28-208ENST00000527797 ARHGEF4Q9NR80 690 aa21.76■■□□□ 1.07
VPS28-208ENST00000527797 DNMT3LQ9UJW3 386 aa21.76■■□□□ 1.07
VPS28-208ENST00000527797 BHMG1C9JSJ3 638 aaPredicted RBP21.75■■□□□ 1.07
VPS28-208ENST00000527797 MCF2LO15068 1137 aa21.75■■□□□ 1.07
VPS28-208ENST00000527797 PAGE1O75459 146 aa21.75■■□□□ 1.07
VPS28-208ENST00000527797 APOEP02649 317 aa21.75■■□□□ 1.07
VPS28-208ENST00000527797 ITGAVP06756 1048 aa21.75■■□□□ 1.07
VPS28-208ENST00000527797 IRS1P35568 1242 aa21.75■■□□□ 1.07
VPS28-208ENST00000527797 CLCN4P51793 760 aa21.75■■□□□ 1.07
VPS28-208ENST00000527797 EIF3EP60228 445 aaKnown RBP21.75■■□□□ 1.07
VPS28-208ENST00000527797 OASLQ15646 514 aaKnown RBP21.75■■□□□ 1.07
VPS28-208ENST00000527797 KLHDC10Q6PID8 442 aa21.75■■□□□ 1.07
VPS28-208ENST00000527797 IFT81Q8WYA0 676 aa21.75■■□□□ 1.07
VPS28-208ENST00000527797 NACA2Q9H009 215 aa21.75■■□□□ 1.07
VPS28-208ENST00000527797 SLC12A6Q9UHW9 1150 aa21.75■■□□□ 1.07
VPS28-208ENST00000527797 MSRAQ9UJ68 235 aa21.75■■□□□ 1.07
VPS28-208ENST00000527797 C1RP00736 705 aa21.74■■□□□ 1.07
VPS28-208ENST00000527797 PBX2P40425 430 aa21.74■■□□□ 1.07
VPS28-208ENST00000527797 TUBP50607 506 aa21.74■■□□□ 1.07
VPS28-208ENST00000527797 CLCN6P51797 869 aa21.74■■□□□ 1.07
VPS28-208ENST00000527797 CUL1Q13616 776 aa21.74■■□□□ 1.07
VPS28-208ENST00000527797 DPYSQ14117 519 aa21.74■■□□□ 1.07
VPS28-208ENST00000527797 MAP9Q49MG5 647 aa21.74■■□□□ 1.07
VPS28-208ENST00000527797 PABPC1LQ4VXU2 614 aaKnown RBP21.74■■□□□ 1.07
VPS28-208ENST00000527797 DUPD1Q68J44 220 aa21.74■■□□□ 1.07
VPS28-208ENST00000527797 ELMOD1Q8N336 334 aa21.74■■□□□ 1.07
VPS28-208ENST00000527797 SEC14L1Q92503 715 aa21.74■■□□□ 1.07
VPS28-208ENST00000527797 PBX4Q9BYU1 374 aa21.74■■□□□ 1.07
VPS28-208ENST00000527797 TRIM31Q9BZY9 425 aa21.74■■□□□ 1.07
VPS28-208ENST00000527797 SIK2Q9H0K1 926 aa21.74■■□□□ 1.07
VPS28-208ENST00000527797 FAM114A2Q9NRY5 505 aa21.74■■□□□ 1.07
VPS28-208ENST00000527797 HEY1Q9Y5J3 304 aa21.74■■□□□ 1.07
VPS28-208ENST00000527797 SNX10Q9Y5X0 201 aa21.74■■□□□ 1.07
VPS28-208ENST00000527797 MOCS2O96007 188 aaPredicted RBP21.73■■□□□ 1.07
VPS28-208ENST00000527797 NR2C2P49116 596 aa21.73■■□□□ 1.07
VPS28-208ENST00000527797 RING1Q06587 406 aa21.73■■□□□ 1.07
VPS28-208ENST00000527797 PTK6Q13882 451 aa21.73■■□□□ 1.07
VPS28-208ENST00000527797 RAB30Q15771 203 aa21.73■■□□□ 1.07
VPS28-208ENST00000527797 NCBP2-AS2Q69YL0 99 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms