RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 LHX5Q9H2C1 402 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 CCSER2Q9H7U1 834 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 ZDHHC4Q9NPG8 344 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 TMEM9BQ9NQ34 198 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 CYLDQ9NQC7 956 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 CNGB3Q9NQW8 809 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 ST7Q9NRC1 585 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 ZFHX4Q86UP3 3567 aa10.6□□□□□ -0.71
VPS28-204ENST00000526054 ITIH6Q6UXX5 1313 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 A0A1W2PQH9 124 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 TCRBV21S2A2A0A5A6 115 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 GOLGA6L3A6NEY3 463 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 LRRC53A6NM62 1247 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 C4orf47A7E2U8 309 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 PATE3B3GLJ2 98 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 HOXC11O43248 304 aaPredicted RBP10.59□□□□□ -0.71
VPS28-204ENST00000526054 SART1O43290 800 aaKnown RBP10.59□□□□□ -0.71
VPS28-204ENST00000526054 LSM8O95777 96 aaKnown RBP10.59□□□□□ -0.71
VPS28-204ENST00000526054 ZBED1O96006 694 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 IRF1P10914 325 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 CHRM1P11229 460 aaPredicted RBP10.59□□□□□ -0.71
VPS28-204ENST00000526054 RALAP11233 206 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 LCP1P13796 627 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 HNRNPLP14866 589 aaKnown RBP eCLIP10.59□□□□□ -0.71
VPS28-204ENST00000526054 P2RY2P41231 377 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 KIR2DL1P43626 348 aaPredicted RBP10.59□□□□□ -0.71
VPS28-204ENST00000526054 SHC2P98077 582 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 ARID5AQ03989 594 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 PDCLQ13371 301 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 TRIM14Q14142 442 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 ASIC2Q16515 512 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 ANO4Q32M45 955 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 PREPLQ4J6C6 727 aaPredicted RBP10.59□□□□□ -0.71
VPS28-204ENST00000526054 SFMBT2Q5VUG0 894 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 TAF3Q5VWG9 929 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 PM20D1Q6GTS8 502 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 PMF1Q6P1K2 205 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 SARM1Q6SZW1 724 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 TRIM72Q6ZMU5 477 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 ARMCX6Q7L4S7 300 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 LPCAT2Q7L5N7 544 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 TRMT11Q7Z4G4 463 aaKnown RBP10.59□□□□□ -0.71
VPS28-204ENST00000526054 NOP9Q86U38 636 aaKnown RBP10.59□□□□□ -0.71
VPS28-204ENST00000526054 PASD1Q8IV76 773 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 BBS7Q8IWZ6 715 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 SCML4Q8N228 414 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 PGBD3Q8N328 593 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 PHTF2Q8N3S3 785 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 ZNF513Q8N8E2 541 aaPredicted RBP10.59□□□□□ -0.71
VPS28-204ENST00000526054 TMEM35BQ8NCS4 154 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 MSANTD4Q8NCY6 345 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 C1orf131Q8NDD1 294 aaKnown RBP10.59□□□□□ -0.71
VPS28-204ENST00000526054 ZNF397Q8NF99 534 aaPredicted RBP10.59□□□□□ -0.71
VPS28-204ENST00000526054 OLIG1Q8TAK6 271 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 IPO4Q8TEX9 1081 aaKnown RBP10.59□□□□□ -0.71
VPS28-204ENST00000526054 HMGB4Q8WW32 186 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 RLN3Q8WXF3 142 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 IRGQQ8WZA9 623 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 BAP1Q92560 729 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 PIGKQ92643 395 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 GOLGA1Q92805 767 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 TTYH3Q9C0H2 523 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 NUCKS1Q9H1E3 243 aaKnown RBP10.59□□□□□ -0.71
VPS28-204ENST00000526054 RBSNQ9H1K0 784 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 SYNCQ9H7C4 482 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 CHORDC1Q9UHD1 332 aaPredicted RBP10.59□□□□□ -0.71
VPS28-204ENST00000526054 NAGPAQ9UK23 515 aa10.59□□□□□ -0.71
VPS28-204ENST00000526054 NOCTQ9UK39 431 aaKnown RBP10.59□□□□□ -0.71
VPS28-204ENST00000526054 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.59□□□□□ -0.718e-7■■□□□ 13.6
VPS28-204ENST00000526054 CEP192Q8TEP8 1941 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 A0A1W2PQJ5 194 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 TBC1D3BA6NDS4 549 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 MAP3K13O43283 966 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 TLR5O60602 858 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 ADAM23O75077 832 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 TULP3O75386 442 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 TPM1P09493 284 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 RARGP13631 454 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 CDH5P33151 784 aaPredicted RBP10.58□□□□□ -0.72
VPS28-204ENST00000526054 TNFRSF4P43489 277 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 RPL34P49207 117 aaKnown RBP10.58□□□□□ -0.72
VPS28-204ENST00000526054 DAOAP59103 153 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 YWHAGP61981 247 aaKnown RBP eCLIP10.58□□□□□ -0.72
VPS28-204ENST00000526054 CDR2Q01850 454 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 GOLGA8FQ08AF8 430 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 GOLGA8DPQ0D2H9 430 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 ZNF252P-AS1Q0IIN9 211 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 C10orf76Q5T2E6 689 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 SH3PXD2AQ5TCZ1 1133 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 EMC10Q5UCC4 262 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 SPECC1LQ69YQ0 1117 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 NUDT18Q6ZVK8 323 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 RSRC2Q7L4I2 434 aaKnown RBP10.58□□□□□ -0.72
VPS28-204ENST00000526054 ETFBKMTQ8IXQ9 262 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 NAT16Q8N8M0 369 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 TERB1Q8NA31 727 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 PPP1R13BQ96KQ4 1090 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 TRIM62Q9BVG3 475 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 SLC4A5Q9BY07 1137 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 TRIM5Q9C035 493 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms