RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 TTC30AQ86WT1 665 aa5.26□□□□□ -1.57
CD44-220ENST00000525688 C1orf210Q8IVY1 113 aa5.26□□□□□ -1.57
CD44-220ENST00000525688 ARHGEF19Q8IW93 802 aa5.26□□□□□ -1.57
CD44-220ENST00000525688 BRSK2Q8IWQ3 736 aa5.26□□□□□ -1.57
CD44-220ENST00000525688 ARL6IP6Q8N6S5 226 aa5.26□□□□□ -1.57
CD44-220ENST00000525688 B3GALNT2Q8NCR0 500 aa5.26□□□□□ -1.57
CD44-220ENST00000525688 SLC25A43Q8WUT9 341 aaPredicted RBP5.26□□□□□ -1.57
CD44-220ENST00000525688 SOCS4Q8WXH5 440 aa5.26□□□□□ -1.57
CD44-220ENST00000525688 HDAC2Q92769 488 aaKnown RBP5.26□□□□□ -1.57
CD44-220ENST00000525688 CCDC34Q96HJ3 373 aa5.26□□□□□ -1.57
CD44-220ENST00000525688 RSRC1Q96IZ7 334 aaKnown RBP5.26□□□□□ -1.57
CD44-220ENST00000525688 C20orf173Q96LM9 149 aa5.26□□□□□ -1.57
CD44-220ENST00000525688 ZMAT2Q96NC0 199 aaKnown RBP5.26□□□□□ -1.57
CD44-220ENST00000525688 HAPLN3Q96S86 360 aa5.26□□□□□ -1.57
CD44-220ENST00000525688 CDK5RAP1Q96SZ6 601 aaKnown RBP5.26□□□□□ -1.57
CD44-220ENST00000525688 GPR20Q99678 358 aa5.26□□□□□ -1.57
CD44-220ENST00000525688 PAAF1Q9BRP4 392 aa5.26□□□□□ -1.57
CD44-220ENST00000525688 PYM1Q9BRP8 204 aaKnown RBP5.26□□□□□ -1.57
CD44-220ENST00000525688 XPO4Q9C0E2 1151 aaKnown RBP5.26□□□□□ -1.57
CD44-220ENST00000525688 RRP7BPQ9NSQ0 103 aa5.26□□□□□ -1.57
CD44-220ENST00000525688 STEAP1Q9UHE8 339 aa5.26□□□□□ -1.57
CD44-220ENST00000525688 NFU1Q9UMS0 254 aa5.26□□□□□ -1.57
CD44-220ENST00000525688 DAPP1Q9UN19 280 aa5.26□□□□□ -1.57
CD44-220ENST00000525688 FZD1Q9UP38 647 aa5.26□□□□□ -1.57
CD44-220ENST00000525688 DRG1Q9Y295 367 aaKnown RBP5.26□□□□□ -1.57
CD44-220ENST00000525688 SNX5Q9Y5X3 404 aa5.26□□□□□ -1.57
CD44-220ENST00000525688 MROH2AA6NES4 1674 aa5.26□□□□□ -1.57
CD44-220ENST00000525688 C3P01024 1663 aa5.26□□□□□ -1.57
CD44-220ENST00000525688 ROCK1Q13464 1354 aa5.26□□□□□ -1.57
CD44-220ENST00000525688 MROH1Q8NDA8 1641 aa5.26□□□□□ -1.57
CD44-220ENST00000525688 RNF17Q9BXT8 1623 aaKnown RBP5.26□□□□□ -1.57
CD44-220ENST00000525688 NPATQ14207 1427 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 KDM5DQ9BY66 1539 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 HMX3A6NHT5 357 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 RRN3P2A6NIE6 340 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 EFCAB8A8MWE9 144 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 SLC16A3O15427 465 aaKnown RBP5.25□□□□□ -1.57
CD44-220ENST00000525688 CKMT1AP12532 417 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 GALNSP34059 522 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 DEKP35659 375 aaKnown RBP5.25□□□□□ -1.57
CD44-220ENST00000525688 PAPOLAP51003 745 aaKnown RBP5.25□□□□□ -1.57
CD44-220ENST00000525688 SNX16P57768 344 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 GUCY1B3Q02153 619 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 MTAPQ13126 283 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 CSHL1Q14406 222 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 TAF12Q16514 161 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 LY6KQ17RY6 165 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 FAM110CQ1W6H9 321 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 TEDDM1Q5T9Z0 273 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 TTC22Q5TAA0 569 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 ERICH6BQ5W0A0 696 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 VWA1Q6PCB0 445 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 CLEC9AQ6UXN8 241 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 RHOUQ7L0Q8 258 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 LRRTM4Q86VH4 590 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 RAB11FIP4Q86YS3 637 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 SIMC1Q8NDZ2 872 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 SSH3Q8TE77 659 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 AFAP1L1Q8TED9 768 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 HERVK_113Q902F9 699 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 LPIN2Q92539 896 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 EXTL1Q92935 676 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 LENG9Q96B70 501 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 TBC1D31Q96DN5 1066 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 PTCD3Q96EY7 689 aaKnown RBP5.25□□□□□ -1.57
CD44-220ENST00000525688 PGBD1Q96JS3 809 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 SEC62Q99442 399 aaKnown RBP5.25□□□□□ -1.57
CD44-220ENST00000525688 TTPALQ9BTX7 342 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 C1QTNF3Q9BXJ4 246 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 SEPSECSQ9HD40 501 aaKnown RBP5.25□□□□□ -1.57
CD44-220ENST00000525688 ZCCHC17Q9NP64 241 aaKnown RBP5.25□□□□□ -1.57
CD44-220ENST00000525688 TBCCD1Q9NVR7 557 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 FEM1BQ9UK73 627 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 C19orf53Q9UNZ5 99 aaPredicted RBP5.25□□□□□ -1.57
CD44-220ENST00000525688 SH2B3Q9UQQ2 575 aa5.25□□□□□ -1.57
CD44-220ENST00000525688 CLTCQ00610 1675 aaKnown RBP5.24□□□□□ -1.57
CD44-220ENST00000525688 PRDM15P57071 1507 aaPredicted RBP5.24□□□□□ -1.57
CD44-220ENST00000525688 GXYLT2A0PJZ3 443 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 A1L4Q6 167 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 ANKRD18BA2A2Z9 1011 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 WDR27A2RRH5 827 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 TRIM64CA6NLI5 447 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 H0Y3Z8 333 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 WDR47O94967 919 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 DDX58O95786 925 aaKnown RBP5.24□□□□□ -1.57
CD44-220ENST00000525688 TK1P04183 234 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 EGR2P11161 476 aaPredicted RBP5.24□□□□□ -1.57
CD44-220ENST00000525688 KRT20P35900 424 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 MTHFSP49914 203 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 PRKAA2P54646 552 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 PLP2Q04941 152 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 MTA1Q13330 715 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 CUL4BQ13620 913 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 TP53BP2Q13625 1128 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 DCTN1Q14203 1278 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 SF3B3Q15393 1217 aaKnown RBP5.24□□□□□ -1.57
CD44-220ENST00000525688 USP39Q53GS9 565 aaKnown RBP5.24□□□□□ -1.57
CD44-220ENST00000525688 CCDC158Q5M9N0 1113 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 GPATCH4Q5T3I0 446 aaKnown RBP5.24□□□□□ -1.57
CD44-220ENST00000525688 ANKRD45Q5TZF3 282 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms