RNA–Protein interactions for RNA: ENST00000513284.5

RNF4-218, Transcript of ring finger protein 4, human

TSL 4

Gene RNF4, Length 517 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-218	ENST00000513284	SCML2	Q9UQR0	700 aa		11.76	□□□□□ -0.53
RNF4-218	ENST00000513284	PCDHB1	Q9Y5F3	818 aa		11.76	□□□□□ -0.53
RNF4-218	ENST00000513284		A0A1W2PPC4	97 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	FRMD3	A2A2Y4	597 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	STAU1	O95793	577 aa	Known RBP	11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	RARG	P13631	454 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	CCDC130	P13994	396 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	GAP43	P17677	238 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	LONP1	P36776	959 aa	Known RBP	11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	GALC	P54803	685 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	MAP3K7CL	P57077	242 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	TMPRSS3	P57727	454 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	ILK	Q13418	452 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	SURF1	Q15526	300 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	SFMBT2	Q5VUG0	894 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	KIAA0895L	Q68EN5	471 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	SERPINA13P	Q6UXR4	307 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	BRAP	Q7Z569	592 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	ANKS1B	Q7Z6G8	1248 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	ADAT2	Q7Z6V5	191 aa	Known RBP	11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	ACOT1	Q86TX2	421 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	ZC3H3	Q8IXZ2	948 aa	Known RBP	11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	C12orf29	Q8N999	325 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	RDH13	Q8NBN7	331 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	CYB5D2	Q8WUJ1	264 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	SMARCD1	Q96GM5	515 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	TMX3	Q96JJ7	454 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	ACE2	Q9BYF1	805 aa	Predicted RBP	11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	CIPC	Q9C0C6	399 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	MTG2	Q9H4K7	406 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	KRT82	Q9NSB4	513 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	IL17B	Q9UHF5	180 aa		11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	AGO1	Q9UL18	857 aa	Known RBP	11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	TP53BP1	Q12888	1972 aa	Predicted RBP	11.75	□□□□□ -0.53
RNF4-218	ENST00000513284	TIMM44	O43615	452 aa		11.74	□□□□□ -0.53
RNF4-218	ENST00000513284	MT-CO3	P00414	261 aa		11.74	□□□□□ -0.53
RNF4-218	ENST00000513284	CKMT2	P17540	419 aa		11.74	□□□□□ -0.53
RNF4-218	ENST00000513284	ABCB4	P21439	1286 aa		11.74	□□□□□ -0.53
RNF4-218	ENST00000513284	EPHA8	P29322	1005 aa	Predicted RBP	11.74	□□□□□ -0.53
RNF4-218	ENST00000513284	RXRG	P48443	463 aa		11.74	□□□□□ -0.53
RNF4-218	ENST00000513284	BCAT1	P54687	386 aa		11.74	□□□□□ -0.53
RNF4-218	ENST00000513284	C21orf59	P57076	290 aa		11.74	□□□□□ -0.53
RNF4-218	ENST00000513284	TNNC1	P63316	161 aa		11.74	□□□□□ -0.53
RNF4-218	ENST00000513284	EIF4H	Q15056	248 aa	Known RBP	11.74	□□□□□ -0.53
RNF4-218	ENST00000513284	PROX2	Q3B8N5	592 aa		11.74	□□□□□ -0.53
RNF4-218	ENST00000513284	ADIPOR2	Q86V24	386 aa		11.74	□□□□□ -0.53
RNF4-218	ENST00000513284	EXD3	Q8N9H8	876 aa		11.74	□□□□□ -0.53
RNF4-218	ENST00000513284	SLC2A14	Q8TDB8	520 aa		11.74	□□□□□ -0.53
RNF4-218	ENST00000513284	HPS3	Q969F9	1004 aa		11.74	□□□□□ -0.53
RNF4-218	ENST00000513284	ZNF578	Q96N58	590 aa	Predicted RBP	11.74	□□□□□ -0.53
RNF4-218	ENST00000513284	FBXO44	Q9H4M3	255 aa		11.74	□□□□□ -0.53
RNF4-218	ENST00000513284	SGK2	Q9HBY8	427 aa		11.74	□□□□□ -0.53
RNF4-218	ENST00000513284	HSPBP1	Q9NZL4	362 aa		11.74	□□□□□ -0.53
RNF4-218	ENST00000513284	SERGEF	Q9UGK8	458 aa		11.74	□□□□□ -0.53
RNF4-218	ENST00000513284	KIAA0391	O15091	583 aa	Known RBP	11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	KLK10	O43240	276 aa		11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	MPO	P05164	745 aa		11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	DLAT	P10515	647 aa	Known RBP	11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	ACP1	P24666	158 aa		11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	HLA-F	P30511	346 aa		11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	CHKA	P35790	457 aa		11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	TXLNA	P40222	546 aa		11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	ZBTB16	Q05516	673 aa		11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	GOLGA8F	Q08AF8	430 aa		11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	VAC14	Q08AM6	782 aa		11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	GOLGA8DP	Q0D2H9	430 aa		11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	FLNC	Q14315	2725 aa		11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	C10orf120	Q5SQS8	335 aa		11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	KIAA1614	Q5VZ46	1190 aa		11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	KDM7A	Q6ZMT4	941 aa		11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	SPATS2	Q86XZ4	545 aa	Known RBP	11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	DHX40	Q8IX18	779 aa	Known RBP	11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	CRYBG2	Q8N1P7	616 aa		11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	ZNF276	Q8N554	614 aa		11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	PLEKHO2	Q8TD55	490 aa		11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	SLC2A11	Q9BYW1	496 aa		11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	TRIM4	Q9C037	500 aa		11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	CAAP1	Q9H8G2	361 aa		11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	CCDC39	Q9UFE4	941 aa		11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	HMGXB4	Q9UGU5	601 aa		11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	BSN	Q9UPA5	3926 aa		11.73	□□□□□ -0.53
RNF4-218	ENST00000513284	ATP8B3	O60423	1300 aa		11.72	□□□□□ -0.53
RNF4-218	ENST00000513284		A0A1W2PNU3	283 aa	Predicted RBP	11.72	□□□□□ -0.53
RNF4-218	ENST00000513284	FAM47DP	A6NHR8	397 aa		11.72	□□□□□ -0.53
RNF4-218	ENST00000513284	TRIM38	O00635	465 aa		11.72	□□□□□ -0.53
RNF4-218	ENST00000513284	TGFB1I1	O43294	461 aa		11.72	□□□□□ -0.53
RNF4-218	ENST00000513284	DXO	O77932	396 aa	Known RBP	11.72	□□□□□ -0.53
RNF4-218	ENST00000513284	HMBS	P08397	361 aa		11.72	□□□□□ -0.53
RNF4-218	ENST00000513284	TNNI1	P19237	187 aa		11.72	□□□□□ -0.53
RNF4-218	ENST00000513284	PDC	P20941	246 aa		11.72	□□□□□ -0.53
RNF4-218	ENST00000513284	CD38	P28907	300 aa		11.72	□□□□□ -0.53
RNF4-218	ENST00000513284	CORO1A	P31146	461 aa	Known RBP	11.72	□□□□□ -0.53
RNF4-218	ENST00000513284	UCN	P55089	124 aa		11.72	□□□□□ -0.53
RNF4-218	ENST00000513284	PCBP4	P57723	403 aa	Known RBP	11.72	□□□□□ -0.53
RNF4-218	ENST00000513284	NXPH1	P58417	271 aa		11.72	□□□□□ -0.53
RNF4-218	ENST00000513284	PSMD6	Q15008	389 aa		11.72	□□□□□ -0.53
RNF4-218	ENST00000513284	BMT2	Q1RMZ1	405 aa		11.72	□□□□□ -0.53
RNF4-218	ENST00000513284	CDCP2	Q5VXM1	449 aa		11.72	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms