RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 MOV10Q9HCE1 1003 aaKnown RBP12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 DDX28Q9NUL7 540 aaKnown RBP12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 SNTG2Q9NY99 539 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 UGT2A1Q9Y4X1 527 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 GNAO1P09471 354 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 COX4I1P13073 169 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 ENO3P13929 434 aaPredicted RBP12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 CD1EP15812 388 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 CKMT2P17540 419 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 WEE1P30291 646 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 CYP2J2P51589 502 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 MRPS15P82914 257 aaKnown RBP12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 ANKRD13BQ86YJ7 626 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 BPIFB6Q8NFQ5 453 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 LRTOMTQ8WZ04 291 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 ZNF512BQ96KM6 892 aaPredicted RBP12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 SERPINI1Q99574 410 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 EPS8L2Q9H6S3 715 aa12.39□□□□□ -0.43
LIMCH1-213ENST00000511496 DIP2CQ9Y2E4 1556 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 GOLGA8QA0A0J9YX86 632 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 GOLGA8OA6NCC3 632 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 GOLGA8NF8WBI6 632 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 H3BUI4 141 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 MEIS1O00470 390 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 CSDE1O75534 798 aaKnown RBP12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 ALX3O95076 343 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 CLIC3O95833 236 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 C8BP07358 591 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 FDX1P10109 184 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 CYP2D6P10635 497 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 PRKACAP17612 351 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 ADSSP30520 456 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 SERPINB5P36952 375 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 TNNI2P48788 182 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 CHRNEQ04844 493 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 TMEM119Q4V9L6 283 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 SLC9A4Q6AI14 798 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 ZFP1Q6P2D0 407 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 ATG14Q6ZNE5 492 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 OTOP3Q7RTS5 596 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 DCP2Q8IU60 420 aaKnown RBP12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 REXO1Q8N1G1 1221 aaKnown RBP12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 DDX17Q92841 729 aaKnown RBP12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 ZNF641Q96N77 438 aaPredicted RBP12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 ACSS3Q9H6R3 686 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 AVENQ9NQS1 362 aaPredicted RBP12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 SERPINB13Q9UIV8 391 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 RIMBP3CA6NJZ7 1639 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 RIMBP3BA6NNM3 1639 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 RIMBP3Q9UFD9 1639 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 SNTNA6NMZ2 147 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 STX16-NPEPL1H3BU86 382 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 SGK1O00141 431 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 USP12O75317 370 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 MAGP20916 626 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 YAP1P46937 504 aaKnown RBP12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 FXR2P51116 673 aaKnown RBP eCLIP12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 IFITM3Q01628 133 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 FNBP1LQ5T0N5 605 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 UGT3A1Q6NUS8 523 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 LLGL2Q6P1M3 1020 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 KCTD8Q6ZWB6 473 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 HACE1Q8IYU2 909 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 TERB1Q8NA31 727 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 KAT5Q92993 513 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 IL12RB2Q99665 862 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 TMEM121Q9BTD3 319 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 NANOGQ9H9S0 305 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 PPCSQ9HAB8 311 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 DNAJC28Q9NX36 388 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 PPP1R1BQ9UD71 204 aaPredicted RBP12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 BOLA1Q9Y3E2 137 aa12.38□□□□□ -0.43
LIMCH1-213ENST00000511496 ERVV-2B6SEH9 535 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 SNPHO15079 494 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 GNL1P36915 607 aaPredicted RBP12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 HADHAP40939 763 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 CACNB3P54284 484 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 EIF2B5Q13144 721 aaKnown RBP12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 MTX3Q5HYI7 312 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 BRSK2Q8IWQ3 736 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 DAGLBQ8NCG7 672 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 GALNT6Q8NCL4 622 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 ZNF420Q8TAQ5 688 aaPredicted RBP12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 ZFYVE19Q96K21 471 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 KLHL32Q96NJ5 620 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 TCF12Q99081 682 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 RUSC1Q9BVN2 902 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 MRPL9Q9BYD2 267 aaKnown RBP12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 TMEM117Q9H0C3 514 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 IL17RBQ9NRM6 502 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 NXF1Q9UBU9 619 aaKnown RBP12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 SORCS3Q9UPU3 1222 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 PKD1L3Q7Z443 1732 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 PIK3C2AO00443 1686 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 KLF11O14901 512 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 NUAK1O60285 661 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 TOP3BO95985 862 aaKnown RBP12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 DCKP27707 260 aa12.37□□□□□ -0.43
LIMCH1-213ENST00000511496 PRKAA2P54646 552 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms