RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 HNRNPCP07910 306 aaKnown RBP eCLIP4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 TBC1D3HP0C7X1 549 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 CKMT1AP12532 417 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 APEHP13798 732 aaKnown RBP4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 DUSP1P28562 367 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 GRK5P34947 590 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 SOX10P56693 466 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 CYP4F2P78329 520 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 RAE1P78406 368 aaKnown RBP4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 HOXA4Q00056 320 aaPredicted RBP4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 RNASELQ05823 741 aaKnown RBP4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 TBC1D3GQ6DHY5 549 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 DGAT2L7PQ6IED9 249 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 TBC1D3CQ6IPX1 549 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 WDR93Q6P2C0 686 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 TBC1D3Q8IZP1 549 aaPredicted RBP4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 Q8N1X5 172 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 CEP70Q8NHQ1 597 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 DAZAP1Q96EP5 407 aaKnown RBP4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 MMS19Q96T76 1030 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 TIMP4Q99727 224 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 ABHD16BQ9H3Z7 469 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 CDCP1Q9H5V8 836 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 ABHD10Q9NUJ1 306 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 TMLHEQ9NVH6 421 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 SLC17A6Q9P2U8 582 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 GJD2Q9UKL4 321 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 RAB21Q9UL25 225 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 TRPC5Q9UL62 973 aaPredicted RBP4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 DERAQ9Y315 318 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 PCDHA10Q9Y5I2 948 aa4.59□□□□□ -1.67
HMGB1P28-201ENST00000507778 A0A087X1B8 175 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 FAM90A20PA6NIJ5 464 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 MBD3L5A6NJ08 208 aaPredicted RBP4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 ZNF213O14771 459 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 FYB1O15117 783 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 RAMP2O60895 175 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 AGR2O95994 175 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 MT-CO3P00414 261 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 MBPP02686 304 aaPredicted RBP4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 CNTFP26441 200 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 CACNA2D1P54289 1103 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 FAM3BP58499 235 aaPredicted RBP4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 TLE3Q04726 772 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 AKNAD1Q5T1N1 836 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 LCE5AQ5TCM9 118 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 TRIM72Q6ZMU5 477 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 BCDIN3DQ7Z5W3 292 aaKnown RBP4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 LRRTM4Q86VH4 590 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 LINC01465Q8N7H1 131 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 AMER2Q8N7J2 671 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 PNISRQ8TF01 805 aaKnown RBP4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 TRMT61AQ96FX7 289 aaKnown RBP4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 MAELQ96JY0 434 aaKnown RBP4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 HS6ST2Q96MM7 605 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 BBC3Q96PG8 261 aaPredicted RBP4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 MACROD1Q9BQ69 325 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 DUSP26Q9BV47 211 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 ELOVL1Q9BW60 279 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 ADGRE3Q9BY15 652 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 KRTAP4-11Q9BYQ6 195 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 NOD2Q9HC29 1040 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 IL17RBQ9NRM6 502 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 RASSF1Q9NS23 344 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 GAR1Q9NY12 217 aaKnown RBP4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 PDP2Q9P2J9 529 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 ANAPC4Q9UJX5 808 aa4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 RRP7AQ9Y3A4 280 aaKnown RBP4.58□□□□□ -1.68
HMGB1P28-201ENST00000507778 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 AGAP5A6NIR3 686 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 TTC34A8MYJ7 566 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 CLIC1O00299 241 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 MGST3O14880 152 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 SEPT4O43236 478 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 JTBO76095 146 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 POLBP06746 335 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 SLC3A2P08195 630 aaKnown RBP4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 CYP3A4P08684 503 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 CYP21A2P08686 494 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 PEPDP12955 493 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 WT1P19544 449 aaPredicted RBP4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 PCP4P48539 62 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 AGTR2P50052 363 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 FOXL2P58012 376 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 TAS2R50P59544 299 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 PDCLQ13371 301 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 SLC12A1Q13621 1099 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 DCTN1Q14203 1278 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 MFSD13AQ14CX5 517 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 CNGA3Q16281 694 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 TMEM65Q6PI78 240 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 KYAT3Q6YP21 454 aaKnown RBP4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 SYNE3Q6ZMZ3 975 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 RASGRP2Q7LDG7 609 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 MRGPRGQ86SM5 289 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 CPOQ8IVL8 374 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 FSIP1Q8NA03 581 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 SIMC1Q8NDZ2 872 aa4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 SRFBP1Q8NEF9 429 aaKnown RBP4.57□□□□□ -1.68
HMGB1P28-201ENST00000507778 MAFAQ8NHW3 353 aaPredicted RBP4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms