RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 PTCH2Q9Y6C5 1203 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 TSC2P49815 1807 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 TRIP12Q14669 1992 aaPredicted RBP12.37□□□□□ -0.43
NUP54-202ENST00000502850 FAM159BA6NKW6 160 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 C9IYK1 514 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 MTSS1O43312 755 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 NEFHP12036 1026 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 GOT1P17174 413 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 TKTP29401 623 aaKnown RBP12.37□□□□□ -0.43
NUP54-202ENST00000502850 RPL9P32969 192 aaKnown RBP12.37□□□□□ -0.43
NUP54-202ENST00000502850 GJA9P57773 515 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 PURAQ00577 322 aaKnown RBP12.37□□□□□ -0.43
NUP54-202ENST00000502850 DEUP1Q05D60 604 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 SOX4Q06945 474 aaPredicted RBP12.37□□□□□ -0.43
NUP54-202ENST00000502850 FAAP100Q0VG06 881 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 SF3A3Q12874 501 aaKnown RBP eCLIP12.37□□□□□ -0.43
NUP54-202ENST00000502850 PAFAH1B3Q15102 231 aaKnown RBP12.37□□□□□ -0.43
NUP54-202ENST00000502850 PRKD1Q15139 912 aaPredicted RBP12.37□□□□□ -0.43
NUP54-202ENST00000502850 DCAF6Q58WW2 860 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 PRAMEF19Q5SWL8 479 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 ZNF449Q6P9G9 518 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 C17orf99Q6UX52 265 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 OTOAQ7RTW8 1153 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 TBC1D1Q86TI0 1168 aaPredicted RBP12.37□□□□□ -0.43
NUP54-202ENST00000502850 FAM228AQ86W67 206 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 OSTM1Q86WC4 334 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 AGGF1Q8N302 714 aaeCLIP12.37□□□□□ -0.43
NUP54-202ENST00000502850 RNF139Q8WU17 664 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 C10orf82Q8WW14 230 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 MTG1Q9BT17 334 aaPredicted RBP12.37□□□□□ -0.43
NUP54-202ENST00000502850 TSSK1BQ9BXA7 367 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 CNGB3Q9NQW8 809 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 ARHGEF4Q9NR80 690 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 ARHGEF3Q9NR81 526 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 GRID1Q9ULK0 1009 aa12.37□□□□□ -0.43
NUP54-202ENST00000502850 PDE4DIPQ5VU43 2346 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 ARHGEF37A1IGU5 675 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 TRIM49D1C9J1S8 452 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 I3L4J1 428 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 CAPN9O14815 690 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 DUSP11O75319 330 aaKnown RBP12.36□□□□□ -0.43
NUP54-202ENST00000502850 ATP6V1G2O95670 118 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 F9P00740 461 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 PYGBP11216 843 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 TFE3P19532 575 aaPredicted RBP12.36□□□□□ -0.43
NUP54-202ENST00000502850 PCSK1P29120 753 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 ETV4P43268 484 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 NRLP54845 237 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 SCAPQ12770 1279 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 PARP6Q2NL67 630 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 ARL13BQ3SXY8 428 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 INTS6LQ5JSJ4 861 aaKnown RBP12.36□□□□□ -0.43
NUP54-202ENST00000502850 ANKRD20A2Q5SQ80 823 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 ANKRD20A1Q5TYW2 823 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 ANKRD20A3Q5VUR7 823 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 ATG16L1Q676U5 607 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 STEAP4Q687X5 459 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 LRRC8BQ6P9F7 803 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 UNC5AQ6ZN44 842 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 ASRGL1Q7L266 308 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 FAM131BQ86XD5 332 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 ACMSDQ8TDX5 336 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 ARMC5Q96C12 935 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 ERP27Q96DN0 273 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 STAMBPL1Q96FJ0 436 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 SIGLEC10Q96LC7 697 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 SYT15Q9BQS2 421 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 ARHGAP39Q9C0H5 1083 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 TSPYL2Q9H2G4 693 aaPredicted RBP12.36□□□□□ -0.43
NUP54-202ENST00000502850 LRMDAQ9H2I8 198 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 RNF39Q9H2S5 420 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 SPC25Q9HBM1 224 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 GOLGA2P5Q9HBQ8 144 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 SLCO1B3Q9NPD5 702 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 SAR1AQ9NR31 198 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 DDX43Q9NXZ2 648 aaKnown RBP12.36□□□□□ -0.43
NUP54-202ENST00000502850 FLRT1Q9NZU1 646 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 GJD2Q9UKL4 321 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 CDH9Q9ULB4 789 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 GIT1Q9Y2X7 761 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 MTO1Q9Y2Z2 717 aaKnown RBP12.36□□□□□ -0.43
NUP54-202ENST00000502850 MAD1L1Q9Y6D9 718 aa12.36□□□□□ -0.43
NUP54-202ENST00000502850 KIAA0100Q14667 2235 aaKnown RBP12.36□□□□□ -0.43
NUP54-202ENST00000502850 SDR42E2A6NKP2 422 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 M0QYT0 321 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 EEF2KO00418 725 aaKnown RBP12.35□□□□□ -0.43
NUP54-202ENST00000502850 PTGESO14684 152 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 AVILO75366 819 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 WFS1O76024 890 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 METTL18O95568 372 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 GNRH1P01148 92 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 C1QAP02745 245 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 ATP5BP06576 529 aaKnown RBP12.35□□□□□ -0.43
NUP54-202ENST00000502850 THP07101 528 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 EZRP15311 586 aaKnown RBP12.35□□□□□ -0.43
NUP54-202ENST00000502850 PGAM1P18669 254 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 AMPD1P23109 780 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 HCAR3P49019 387 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 RAB27AP51159 221 aa12.35□□□□□ -0.43
NUP54-202ENST00000502850 CDK18Q07002 472 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms