RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 C20orf27Q9GZN8 174 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 HESX1Q9UBX0 185 aa16.62■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 LUC7L3O95232 432 aaKnown RBP16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 SETSIPP0DME0 302 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 TMPRSS15P98073 1019 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 SP3Q02447 781 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 PRKCZQ05513 592 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 CHI3L2Q15782 390 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 DPYSL2Q16555 572 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 SLC5A9Q2M3M2 681 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 C4orf22Q6V702 233 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 SESTD1Q86VW0 696 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 NT5DC4Q86YG4 428 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 TRIM42Q8IWZ5 723 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 CCDC33Q8N5R6 958 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 CLEC4CQ8WTT0 213 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 LENG1Q96BZ8 264 aaPredicted RBP16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 MTBPQ96DY7 904 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 MROH8Q9H579 483 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 IRAK4Q9NWZ3 460 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 PCDHA11Q9Y5I1 949 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 CCDC195A0A1B0GUA6 201 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 A6NHS1 94 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 SNNO75324 88 aaPredicted RBP16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 SKAP2O75563 359 aaPredicted RBP16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 KRT36O76013 467 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 KRT38O76015 456 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 CRHR1P34998 444 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 MROH9Q5TGP6 573 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ATG16L1Q676U5 607 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 TRIM68Q6AZZ1 485 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 MAMDC4Q6UXC1 1216 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ADGRF2Q8IZF7 708 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 VPS52Q8N1B4 723 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 NRG4Q8WWG1 115 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 CENPIQ92674 756 aaPredicted RBP16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 MMADHCQ9H3L0 296 aaPredicted RBP16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 PCMTD2Q9NV79 361 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 MAD1L1Q9Y6D9 718 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 RPS6KL1Q9Y6S9 549 aa16.61■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 I3L4J1 428 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 BPGMP07738 259 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 PTPN9P43378 593 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 TRIM32Q13049 653 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 KCNT2Q6UVM3 1135 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 NUDCD3Q8IVD9 361 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ARID3BQ8IVW6 561 aaPredicted RBP16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 NDUFAF2Q8N183 169 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 TEX9Q8N6V9 391 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 FBXO27Q8NI29 283 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ZNF333Q96JL9 665 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ZMAT2Q96NC0 199 aaKnown RBP16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 QKIQ96PU8 341 aaKnown RBP eCLIP16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 KCTD15Q96SI1 283 aaPredicted RBP16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 MOCS1Q9NZB8 636 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 CORO1CQ9ULV4 474 aaPredicted RBP16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 SNX9Q9Y5X1 595 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 NR2E3Q9Y5X4 410 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 HCRTO43612 131 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 TOP3BO95985 862 aaKnown RBP16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ALDH1A1P00352 501 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 GSRP00390 522 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ELNP15502 786 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 GRM5P41594 1212 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 CPA2P48052 419 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 CDK18Q07002 472 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 SEMA5AQ13591 1074 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 RCN1Q15293 331 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 TAPT1Q6NXT6 567 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 MTHFD1LQ6UB35 978 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 TIFABQ6ZNK6 161 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 NLRP7Q8WX94 980 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 MCUR1Q96AQ8 359 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 DPEP3Q9H4B8 488 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 DHX35Q9H5Z1 703 aaKnown RBP16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 STOML1Q9UBI4 398 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 GTF2IRD1Q9UHL9 959 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 MFHAS1Q9Y4C4 1052 aa16.6■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 RALGAPA2Q2PPJ7 1873 aa16.59■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 PSMG1O95456 288 aa16.59■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ACADSP16219 412 aa16.59■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 GRB14Q14449 540 aa16.59■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 SOWAHAQ2M3V2 549 aa16.59■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ARMCX2Q7L311 632 aa16.59■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 UNC5BQ8IZJ1 945 aa16.59■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 KLHL23Q8NBE8 558 aa16.59■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 STKLD1Q8NE28 680 aa16.59■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 RAB3IL1Q8TBN0 382 aa16.59■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 DNAJC9Q8WXX5 260 aa16.59■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 CSPG4P5Q96PW8 444 aa16.59■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 NMRK1Q9NWW6 199 aa16.59■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 EIF4E1BA6NMX2 242 aaKnown RBP16.58■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 BIRC5O15392 142 aa16.58■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ZNF286BP0CG31 522 aa16.58■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 FLT3LGP49771 235 aa16.58■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 SERPINB9P50453 376 aa16.58■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 RAP1GDS1P52306 607 aa16.58■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 LAMC2Q13753 1193 aa16.58■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 STEAP4Q687X5 459 aa16.58■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 NCBP2-AS2Q69YL0 99 aa16.58■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms