RNA–Protein interactions for RNA: ENST00000496116.1

CMSS1-208, Transcript of cms1 ribosomal small subunit homolog (yeast), human

TSL 1 (best)

Gene CMSS1, Length 2,145 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CMSS1-208	ENST00000496116	CCDC33	Q8N5R6	958 aa		11.43	□□□□□ -0.58
CMSS1-208	ENST00000496116	ANKLE1	Q8NAG6	615 aa		11.43	□□□□□ -0.58
CMSS1-208	ENST00000496116	COLGALT1	Q8NBJ5	622 aa		11.43	□□□□□ -0.58
CMSS1-208	ENST00000496116	SOCS4	Q8WXH5	440 aa		11.43	□□□□□ -0.58
CMSS1-208	ENST00000496116	WNT8B	Q93098	351 aa		11.43	□□□□□ -0.58
CMSS1-208	ENST00000496116	ZFP42	Q96MM3	310 aa		11.43	□□□□□ -0.58
CMSS1-208	ENST00000496116	SLC2A13	Q96QE2	648 aa		11.43	□□□□□ -0.58
CMSS1-208	ENST00000496116	SRPK1	Q96SB4	655 aa	Known RBP	11.43	□□□□□ -0.58
CMSS1-208	ENST00000496116	APBA2	Q99767	749 aa		11.43	□□□□□ -0.58
CMSS1-208	ENST00000496116	EIF2B3	Q9NR50	452 aa	Known RBP	11.43	□□□□□ -0.58
CMSS1-208	ENST00000496116	DDX43	Q9NXZ2	648 aa	Known RBP	11.43	□□□□□ -0.58
CMSS1-208	ENST00000496116	SYNJ2BP-COX16	A0A087WUM0	186 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	FAM159B	A6NKW6	160 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	CXorf49	A8MYA2	514 aa	Predicted RBP	11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	CLDN5	O00501	218 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	KLF11	O14901	512 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	CREB3	O43889	395 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	MFSD11	O43934	449 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	BEST1	O76090	585 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	AKR1A1	P14550	325 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	VAV1	P15498	845 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	CNTF	P26441	200 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	MAP3K7CL	P57077	242 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	MRPS6	P82932	125 aa	Known RBP	11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	AP1B1	Q10567	949 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	NME3	Q13232	169 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	PAQR9	Q6ZVX9	377 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	PDZD4	Q76G19	769 aa	Predicted RBP	11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	KIF2B	Q8N4N8	673 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	DEPDC1B	Q8WUY9	529 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	NDRG1	Q92597	394 aa	Known RBP	11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	CDKL2	Q92772	493 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	SENP8	Q96LD8	212 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	SLC9A7	Q96T83	725 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	LGMN	Q99538	433 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	C12orf65	Q9H3J6	166 aa	Known RBP	11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	KRT82	Q9NSB4	513 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	MKS1	Q9NXB0	559 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	COX16	Q9P0S2	106 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	ZFP69B	Q9UJL9	534 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	STK38L	Q9Y2H1	464 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	MANSC4	A6NHS7	340 aa	Predicted RBP	11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	SDR42E2	A6NKP2	422 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	EEF2K	O00418	725 aa	Known RBP	11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	KPNA6	O60684	536 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	HNRNPCL1	O60812	293 aa	Known RBP	11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	IL1B	P01584	269 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	TH	P07101	528 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	KRT16	P08779	473 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	CCNF	P41002	786 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	SERPINB4	P48594	390 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	PRKD1	Q15139	912 aa	Predicted RBP	11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	CASC4	Q6P4E1	433 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	LRRC8B	Q6P9F7	803 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	CEP57	Q86XR8	500 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	MPP5	Q8N3R9	675 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	CCNY	Q8ND76	341 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	INPP5D	Q92835	1189 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	STAMBPL1	Q96FJ0	436 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	SYT15	Q9BQS2	421 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	LRMDA	Q9H2I8	198 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	PLAC1	Q9HBJ0	212 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	ALG13	Q9NP73	1137 aa	Known RBP	11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	CHST12	Q9NRB3	414 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	FAM105A	Q9NUU6	356 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	PLLP	Q9Y342	182 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	MFHAS1	Q9Y4C4	1052 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116	TRPV2	Q9Y5S1	764 aa		11.42	□□□□□ -0.58
CMSS1-208	ENST00000496116		I3L4J1	428 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	RNF103	O00237	685 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	C6orf222	P0C671	652 aa	Predicted RBP	11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	CSH1	P0DML2	217 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	CSH2	P0DML3	217 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	RARB	P10826	455 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	EZR	P15311	586 aa	Known RBP	11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	TARS	P26639	723 aa	Known RBP	11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	MLH1	P40692	756 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	NDUFV1	P49821	464 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	HUNK	P57058	714 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	OVGP1	Q12889	678 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	PAFAH1B3	Q15102	231 aa	Known RBP	11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	PARP6	Q2NL67	630 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	NBPF20	Q3BBV1	942 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	ARL13B	Q3SXY8	428 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	TAF1B	Q53T94	588 aa	Predicted RBP	11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	OTUD1	Q5VV17	481 aa	Predicted RBP	11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	ATG16L1	Q676U5	607 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	DSTYK	Q6XUX3	929 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	RFX8	Q6ZV50	586 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	CCDC91	Q7Z6B0	441 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	SLC7A14	Q8TBB6	771 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	PTPRN2	Q92932	1015 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	NTAN1	Q96AB6	310 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	P2RY11	Q96G91	374 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	NAT9	Q9BTE0	207 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	CNGB3	Q9NQW8	809 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	SMYD2	Q9NRG4	433 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	DCTN4	Q9UJW0	460 aa		11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	MTO1	Q9Y2Z2	717 aa	Known RBP	11.41	□□□□□ -0.58
CMSS1-208	ENST00000496116	RAD54B	Q9Y620	910 aa		11.41	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms