RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 FKBP3Q00688 224 aaKnown RBP23.08■■□□□ 1.29
HDDC3-203ENST00000494993 ADIGQ0VDE8 80 aa23.08■■□□□ 1.29
HDDC3-203ENST00000494993 ZNF658Q5TYW1 1059 aaPredicted RBP23.08■■□□□ 1.29
HDDC3-203ENST00000494993 TMEM215Q68D42 235 aa23.08■■□□□ 1.29
HDDC3-203ENST00000494993 FMNL3Q8IVF7 1028 aa23.08■■□□□ 1.29
HDDC3-203ENST00000494993 FMR1NBQ8N0W7 255 aaPredicted RBP23.08■■□□□ 1.29
HDDC3-203ENST00000494993 SORCS1Q8WY21 1168 aa23.08■■□□□ 1.29
HDDC3-203ENST00000494993 DNASE2BQ8WZ79 361 aa23.08■■□□□ 1.29
HDDC3-203ENST00000494993 SIPA1Q96FS4 1042 aa23.08■■□□□ 1.29
HDDC3-203ENST00000494993 HBS1LQ9Y450 684 aaKnown RBP23.08■■□□□ 1.29
HDDC3-203ENST00000494993 NFE2L3Q9Y4A8 694 aa23.08■■□□□ 1.29
HDDC3-203ENST00000494993 WDFY3Q8IZQ1 3526 aa23.07■■□□□ 1.28
HDDC3-203ENST00000494993 GJB3O75712 270 aa23.07■■□□□ 1.28
HDDC3-203ENST00000494993 NCAM1P13591 858 aa23.07■■□□□ 1.28
HDDC3-203ENST00000494993 PRKCHP24723 683 aa23.07■■□□□ 1.28
HDDC3-203ENST00000494993 HOXD9P28356 352 aaPredicted RBP23.07■■□□□ 1.28
HDDC3-203ENST00000494993 HARS2P49590 506 aaKnown RBP23.07■■□□□ 1.28
HDDC3-203ENST00000494993 TPMTP51580 245 aa23.07■■□□□ 1.28
HDDC3-203ENST00000494993 COPAP53621 1224 aa23.07■■□□□ 1.28
HDDC3-203ENST00000494993 FAM193AP78312 1265 aa23.07■■□□□ 1.28
HDDC3-203ENST00000494993 SLC14A1Q13336 389 aa23.07■■□□□ 1.28
HDDC3-203ENST00000494993 HNRNPDQ14103 355 aaKnown RBP23.07■■□□□ 1.28
HDDC3-203ENST00000494993 MPPE1Q53F39 396 aa23.07■■□□□ 1.28
HDDC3-203ENST00000494993 ANKRD40Q6AI12 368 aa23.07■■□□□ 1.28
HDDC3-203ENST00000494993 CADM4Q8NFZ8 388 aa23.07■■□□□ 1.28
HDDC3-203ENST00000494993 RNF139Q8WU17 664 aa23.07■■□□□ 1.28
HDDC3-203ENST00000494993 PRCCQ92733 491 aaPredicted RBP23.07■■□□□ 1.28
HDDC3-203ENST00000494993 IPO9Q96P70 1041 aaKnown RBP23.07■■□□□ 1.28
HDDC3-203ENST00000494993 GSDMAQ96QA5 445 aa23.07■■□□□ 1.28
HDDC3-203ENST00000494993 GPR174Q9BXC1 333 aa23.07■■□□□ 1.28
HDDC3-203ENST00000494993 SFMBT1Q9UHJ3 866 aa23.07■■□□□ 1.28
HDDC3-203ENST00000494993 ZZEF1O43149 2961 aa23.06■■□□□ 1.28
HDDC3-203ENST00000494993 TIMM44O43615 452 aa23.06■■□□□ 1.28
HDDC3-203ENST00000494993 IGLV3-19P01714 112 aa23.06■■□□□ 1.28
HDDC3-203ENST00000494993 EPHX1P07099 455 aa23.06■■□□□ 1.28
HDDC3-203ENST00000494993 VDRP11473 427 aa23.06■■□□□ 1.28
HDDC3-203ENST00000494993 OXTRP30559 389 aa23.06■■□□□ 1.28
HDDC3-203ENST00000494993 PMS1P54277 932 aaKnown RBP23.06■■□□□ 1.28
HDDC3-203ENST00000494993 BSPRYQ5W0U4 402 aa23.06■■□□□ 1.28
HDDC3-203ENST00000494993 SERPINA13PQ6UXR4 307 aa23.06■■□□□ 1.28
HDDC3-203ENST00000494993 SIX6OS1Q8N1H7 587 aa23.06■■□□□ 1.28
HDDC3-203ENST00000494993 UBR7Q8N806 425 aa23.06■■□□□ 1.28
HDDC3-203ENST00000494993 UBA3Q8TBC4 463 aa23.06■■□□□ 1.28
HDDC3-203ENST00000494993 EDEM1Q92611 657 aa23.06■■□□□ 1.28
HDDC3-203ENST00000494993 SLC35C1Q96A29 364 aa23.06■■□□□ 1.28
HDDC3-203ENST00000494993 STOML2Q9UJZ1 356 aa23.06■■□□□ 1.28
HDDC3-203ENST00000494993 MSRB2Q9Y3D2 182 aa23.06■■□□□ 1.28
HDDC3-203ENST00000494993 TMEM131Q92545 1883 aa23.06■■□□□ 1.28
HDDC3-203ENST00000494993 KNL1Q8NG31 2342 aa23.05■■□□□ 1.28
HDDC3-203ENST00000494993 A0A1B0GTW7 788 aa23.05■■□□□ 1.28
HDDC3-203ENST00000494993 YJEFN3A6XGL0 299 aa23.05■■□□□ 1.28
HDDC3-203ENST00000494993 E7ENQ6 273 aa23.05■■□□□ 1.28
HDDC3-203ENST00000494993 H0Y626 953 aa23.05■■□□□ 1.28
HDDC3-203ENST00000494993 O00370 1275 aa23.05■■□□□ 1.28
HDDC3-203ENST00000494993 TSPAN3O60637 253 aa23.05■■□□□ 1.28
HDDC3-203ENST00000494993 TRIM16O95361 564 aa23.05■■□□□ 1.28
HDDC3-203ENST00000494993 SETSIPP0DME0 302 aa23.05■■□□□ 1.28
HDDC3-203ENST00000494993 TBXAS1P24557 533 aaPredicted RBP23.05■■□□□ 1.28
HDDC3-203ENST00000494993 ZNF445P59923 1031 aa23.05■■□□□ 1.28
HDDC3-203ENST00000494993 ARID5AQ03989 594 aa23.05■■□□□ 1.28
HDDC3-203ENST00000494993 GRIK2Q13002 908 aa23.05■■□□□ 1.28
HDDC3-203ENST00000494993 DCAF12L1Q5VU92 463 aa23.05■■□□□ 1.28
HDDC3-203ENST00000494993 SCML4Q8N228 414 aa23.05■■□□□ 1.28
HDDC3-203ENST00000494993 KCTD13Q8WZ19 329 aa23.05■■□□□ 1.28
HDDC3-203ENST00000494993 ZDHHC5Q9C0B5 715 aa23.05■■□□□ 1.28
HDDC3-203ENST00000494993 ABCC13Q9NSE7 274 aa23.05■■□□□ 1.28
HDDC3-203ENST00000494993 ARMCX3Q9UH62 379 aaPredicted RBP23.05■■□□□ 1.28
HDDC3-203ENST00000494993 KLK13Q9UKR3 277 aa23.05■■□□□ 1.28
HDDC3-203ENST00000494993 TP53BP1Q12888 1972 aaPredicted RBP23.05■■□□□ 1.28
HDDC3-203ENST00000494993 TRIM49BA6NDI0 452 aa23.04■■□□□ 1.28
HDDC3-203ENST00000494993 SH3BP5O60239 455 aa23.04■■□□□ 1.28
HDDC3-203ENST00000494993 LATS1O95835 1130 aa23.04■■□□□ 1.28
HDDC3-203ENST00000494993 ACADMP11310 421 aa23.04■■□□□ 1.28
HDDC3-203ENST00000494993 HLA-FP30511 346 aa23.04■■□□□ 1.28
HDDC3-203ENST00000494993 RDXP35241 583 aaKnown RBP23.04■■□□□ 1.28
HDDC3-203ENST00000494993 LRRC63Q05C16 580 aa23.04■■□□□ 1.28
HDDC3-203ENST00000494993 LRMPQ12912 555 aa23.04■■□□□ 1.28
HDDC3-203ENST00000494993 PKDCCQ504Y2 493 aa23.04■■□□□ 1.28
HDDC3-203ENST00000494993 CACUL1Q86Y37 369 aa23.04■■□□□ 1.28
HDDC3-203ENST00000494993 ZCCHC9Q8N567 271 aaKnown RBP23.04■■□□□ 1.28
HDDC3-203ENST00000494993 SPATA20Q8TB22 786 aa23.04■■□□□ 1.28
HDDC3-203ENST00000494993 WFIKKN2Q8TEU8 576 aa23.04■■□□□ 1.28
HDDC3-203ENST00000494993 CAMK1GQ96NX5 476 aa23.04■■□□□ 1.28
HDDC3-203ENST00000494993 NUP58Q9BVL2 599 aa23.04■■□□□ 1.28
HDDC3-203ENST00000494993 MIR1-1HGQ9H1L0 117 aa23.04■■□□□ 1.28
HDDC3-203ENST00000494993 CNGB3Q9NQW8 809 aa23.04■■□□□ 1.28
HDDC3-203ENST00000494993 KIAA1257Q9ULG3 409 aa23.04■■□□□ 1.28
HDDC3-203ENST00000494993 CABIN1Q9Y6J0 2220 aa23.03■■□□□ 1.28
HDDC3-203ENST00000494993 METTL12A8MUP2 240 aa23.03■■□□□ 1.28
HDDC3-203ENST00000494993 MSI1O43347 362 aaKnown RBP23.03■■□□□ 1.28
HDDC3-203ENST00000494993 SMC2O95347 1197 aa23.03■■□□□ 1.28
HDDC3-203ENST00000494993 HLA-EP13747 358 aa23.03■■□□□ 1.28
HDDC3-203ENST00000494993 DAOAP59103 153 aa23.03■■□□□ 1.28
HDDC3-203ENST00000494993 ZNF423Q2M1K9 1284 aa23.03■■□□□ 1.28
HDDC3-203ENST00000494993 ADGRF1Q5T601 910 aa23.03■■□□□ 1.28
HDDC3-203ENST00000494993 LCLAT1Q6UWP7 414 aa23.03■■□□□ 1.28
HDDC3-203ENST00000494993 OR2T3Q8NH03 318 aa23.03■■□□□ 1.28
HDDC3-203ENST00000494993 ERCC4Q92889 916 aaPredicted RBP23.03■■□□□ 1.28
HDDC3-203ENST00000494993 TMA16Q96EY4 203 aaKnown RBP23.03■■□□□ 1.28
HDDC3-203ENST00000494993 PTPRBP23467 1997 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms