RNA–Protein interactions for RNA: ENST00000494612.1

SMC4-224, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-224ENST00000494612 LMAN2Q12907 356 aa5.07□□□□□ -1.6
SMC4-224ENST00000494612 CLCA4Q14CN2 919 aa5.07□□□□□ -1.6
SMC4-224ENST00000494612 EZH2Q15910 746 aaKnown RBP5.07□□□□□ -1.6
SMC4-224ENST00000494612 ST3GAL2Q16842 350 aa5.07□□□□□ -1.6
SMC4-224ENST00000494612 TRIM71Q2Q1W2 868 aaKnown RBP5.07□□□□□ -1.6
SMC4-224ENST00000494612 TBC1D25Q3MII6 688 aa5.07□□□□□ -1.6
SMC4-224ENST00000494612 FAM153CQ494X1 144 aa5.07□□□□□ -1.6
SMC4-224ENST00000494612 C4orf46Q504U0 113 aa5.07□□□□□ -1.6
SMC4-224ENST00000494612 ANKRD45Q5TZF3 282 aa5.07□□□□□ -1.6
SMC4-224ENST00000494612 SYNE3Q6ZMZ3 975 aa5.07□□□□□ -1.6
SMC4-224ENST00000494612 RP9Q8TA86 221 aaKnown RBP5.07□□□□□ -1.6
SMC4-224ENST00000494612 WDR60Q8WVS4 1066 aa5.07□□□□□ -1.6
SMC4-224ENST00000494612 HMGB4Q8WW32 186 aa5.07□□□□□ -1.6
SMC4-224ENST00000494612 RSPRY1Q96DX4 576 aa5.07□□□□□ -1.6
SMC4-224ENST00000494612 CCDC134Q9H6E4 229 aa5.07□□□□□ -1.6
SMC4-224ENST00000494612 KIF17Q9P2E2 1029 aa5.07□□□□□ -1.6
SMC4-224ENST00000494612 RAB21Q9UL25 225 aa5.07□□□□□ -1.6
SMC4-224ENST00000494612 GABRQQ9UN88 632 aa5.07□□□□□ -1.6
SMC4-224ENST00000494612 SH2B3Q9UQQ2 575 aa5.07□□□□□ -1.6
SMC4-224ENST00000494612 A8MVJ9 347 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 GCOM1H8Y6P7 765 aaPredicted RBP5.06□□□□□ -1.6
SMC4-224ENST00000494612 TP73O15350 636 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 CTIFO43310 598 aaKnown RBP5.06□□□□□ -1.6
SMC4-224ENST00000494612 PRAMEF2O60811 474 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 LATS1O95835 1130 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 RXRAP19793 462 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 ADRA1DP25100 572 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 THBS4P35443 961 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 FOXO1Q12778 655 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 TMEM95Q3KNT9 176 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 RNASE12Q5GAN4 147 aaKnown RBP5.06□□□□□ -1.6
SMC4-224ENST00000494612 ZNF569Q5MCW4 686 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 SYT13Q7L8C5 426 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 WDR53Q7Z5U6 358 aaPredicted RBP5.06□□□□□ -1.6
SMC4-224ENST00000494612 FTSJ3Q8IY81 847 aaKnown RBP5.06□□□□□ -1.6
SMC4-224ENST00000494612 FAM71DQ8N9W8 422 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 SPATA3Q8NHX4 192 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 GOLGA1Q92805 767 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 EVI5LQ96CN4 794 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 FSD1LQ9BXM9 530 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 KRTAP2-2Q9BYT5 123 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 CIPCQ9C0C6 399 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 PRDM8Q9NQV8 689 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 VPS45Q9NRW7 570 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 FBXO28Q9NVF7 368 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 SAGE1Q9NXZ1 904 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 RRN3Q9NYV6 651 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 SH3BP4Q9P0V3 963 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 KCND3Q9UK17 655 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 CNTN6Q9UQ52 1028 aa5.06□□□□□ -1.6
SMC4-224ENST00000494612 CCDC187A0A096LP49 1063 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 FAM90A18PA6NE21 464 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 FAM90A16PA6NEW6 464 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 LINC01548A6NM66 108 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 FAM90A9PA6NNJ1 464 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 FAM90A5PA8MXJ8 464 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 H0Y3Z8 333 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 HNRNPCP07910 306 aaKnown RBP eCLIP5.05□□□□□ -1.6
SMC4-224ENST00000494612 FAM90A15PP0C7V4 464 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 FAM90A14PP0C7W9 464 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 TMIGD3P0DMS9 266 aaPredicted RBP5.05□□□□□ -1.6
SMC4-224ENST00000494612 SF3A3Q12874 501 aaKnown RBP eCLIP5.05□□□□□ -1.6
SMC4-224ENST00000494612 SLC10A2Q12908 348 aaPredicted RBP5.05□□□□□ -1.6
SMC4-224ENST00000494612 PPFIA1Q13136 1202 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 PDCLQ13371 301 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 KCNJ12Q14500 433 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 HSP90AB4PQ58FF6 505 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 MTX3Q5HYI7 312 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 FAM90A2PQ658T7 463 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 TANGO2Q6ICL3 276 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 ANKRD16Q6P6B7 361 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 C16orf89Q6UX73 402 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 ZNF782Q6ZMW2 699 aaPredicted RBP5.05□□□□□ -1.6
SMC4-224ENST00000494612 NGDNQ8NEJ9 315 aaKnown RBP5.05□□□□□ -1.6
SMC4-224ENST00000494612 ZBTB9Q96C00 473 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 REXO5Q96IC2 774 aaKnown RBP5.05□□□□□ -1.6
SMC4-224ENST00000494612 ZSCAN31Q96LW9 406 aaPredicted RBP5.05□□□□□ -1.6
SMC4-224ENST00000494612 MMS19Q96T76 1030 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 NUDT22Q9BRQ3 303 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 ISCA1Q9BUE6 129 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 CHODLQ9H9P2 273 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 SNX15Q9NRS6 342 aa5.05□□□□□ -1.6
SMC4-224ENST00000494612 CNTNAP2Q9UHC6 1331 aa5.04□□□□□ -1.6
SMC4-224ENST00000494612 E7EVH7 732 aa5.04□□□□□ -1.6
SMC4-224ENST00000494612 EIF3FO00303 357 aaPredicted RBP5.04□□□□□ -1.6
SMC4-224ENST00000494612 IRAK2O43187 625 aa5.04□□□□□ -1.6
SMC4-224ENST00000494612 TMPRSS11DO60235 418 aa5.04□□□□□ -1.6
SMC4-224ENST00000494612 BMP15O95972 392 aa5.04□□□□□ -1.6
SMC4-224ENST00000494612 PYGLP06737 847 aa5.04□□□□□ -1.6
SMC4-224ENST00000494612 PRR35P0CG20 571 aa5.04□□□□□ -1.6
SMC4-224ENST00000494612 DRD4P21917 467 aa5.04□□□□□ -1.6
SMC4-224ENST00000494612 PAX3P23760 479 aa5.04□□□□□ -1.6
SMC4-224ENST00000494612 CNTFP26441 200 aa5.04□□□□□ -1.6
SMC4-224ENST00000494612 GALNSP34059 522 aa5.04□□□□□ -1.6
SMC4-224ENST00000494612 DGKQP52824 942 aa5.04□□□□□ -1.6
SMC4-224ENST00000494612 POLE2P56282 527 aa5.04□□□□□ -1.6
SMC4-224ENST00000494612 ARL4CP56559 192 aa5.04□□□□□ -1.6
SMC4-224ENST00000494612 TXNL4AP83876 142 aaKnown RBP5.04□□□□□ -1.6
SMC4-224ENST00000494612 CCDC15Q0P6D6 951 aa5.04□□□□□ -1.6
SMC4-224ENST00000494612 LRRC24Q50LG9 513 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms