RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CYP2C9P11712 490 aa17.08■□□□□ 0.32
CCDC88B-210ENST00000494566 ATP6V1C1P21283 382 aa17.08■□□□□ 0.32
CCDC88B-210ENST00000494566 TKTP29401 623 aaKnown RBP17.08■□□□□ 0.32
CCDC88B-210ENST00000494566 TMEM110Q86TL2 294 aa17.08■□□□□ 0.32
CCDC88B-210ENST00000494566 INPP5DQ92835 1189 aa17.08■□□□□ 0.32
CCDC88B-210ENST00000494566 FAM149B1Q96BN6 582 aa17.08■□□□□ 0.32
CCDC88B-210ENST00000494566 KCTD15Q96SI1 283 aaPredicted RBP17.08■□□□□ 0.32
CCDC88B-210ENST00000494566 GCOM2Q9BZD3 368 aaPredicted RBP17.08■□□□□ 0.32
CCDC88B-210ENST00000494566 ZC3H7BQ9UGR2 993 aaKnown RBP17.08■□□□□ 0.32
CCDC88B-210ENST00000494566 HTTP42858 3142 aa17.08■□□□□ 0.32
CCDC88B-210ENST00000494566 CCDC22O60826 627 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 GOT1P17174 413 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 SERPINB4P48594 390 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 AQP5P55064 265 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 KLC1Q07866 573 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 BOLA3Q53S33 107 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 CTU1Q7Z7A3 348 aaKnown RBP17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 BEST2Q8NFU1 509 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 TEKT4Q8WW24 435 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 TBCBQ99426 244 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 CORO1CQ9ULV4 474 aaPredicted RBP17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 G3BP2Q9UN86 482 aaKnown RBP17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 AP4E1Q9UPM8 1137 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 TTLL3Q9Y4R7 772 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 RBM47A0AV96 593 aaKnown RBP17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 DCAF8L1A6NGE4 600 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 ATP5HO75947 161 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 L1CAMP32004 1257 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 EPHB1P54762 984 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 BEX3Q00994 111 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 BST1Q10588 318 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 CASC4Q6P4E1 433 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 KCNT2Q6UVM3 1135 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 OXNAD1Q96HP4 312 aaPredicted RBP17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 TSC22D3Q99576 134 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 DCLRE1BQ9H816 532 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 PAK5Q9P286 719 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 LRRC42Q9Y546 428 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 COL1A2P08123 1366 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 TREHO43280 583 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 GNL1P36915 607 aaPredicted RBP17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 ABCG1P45844 678 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 ZBTB6Q15916 424 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 DCAF4L1Q3SXM0 396 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 LRRC74BQ6ZQY2 392 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 SLC44A1Q8WWI5 657 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 EMID1Q96A84 441 aaPredicted RBP17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 LGMNQ99538 433 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 MTMR10Q9NXD2 777 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 KIAA1257Q9ULG3 409 aa17.07■□□□□ 0.32
CCDC88B-210ENST00000494566 SMIM28A0A1B0GU29 152 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 ARHGAP42A6NI28 874 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 A6NJR5 290 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 BEST1O76090 585 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 STK10O94804 968 aaKnown RBP17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 PSMG1O95456 288 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 DLDP09622 509 aaKnown RBP17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 NDUFV1P49821 464 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 ATXN3P54252 364 aaPredicted RBP17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 BIRC2Q13490 618 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 PDK2Q15119 407 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 FBXO47Q5MNV8 452 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 SLC9A4Q6AI14 798 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 NOTUMQ6P988 496 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 CES3Q6UWW8 571 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 DENND5BQ6ZUT9 1274 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 ZNF410Q86VK4 478 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 TP53INP2Q8IXH6 220 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 TEX9Q8N6V9 391 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 ARRDC4Q8NCT1 418 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 SYT17Q9BSW7 474 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 POPDC2Q9HBU9 364 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 SPON1Q9HCB6 807 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 PDE5AO76074 875 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 LUC7L3O95232 432 aaKnown RBP17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 CDK16Q00536 496 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 RBM15BQ8NDT2 890 aaKnown RBP17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 PTCD3Q96EY7 689 aaKnown RBP17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 ZNF333Q96JL9 665 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 PTPN18Q99952 460 aa17.06■□□□□ 0.32
CCDC88B-210ENST00000494566 LOC100653049A0A140TA62 436 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 A6NHS1 94 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 MEIS3P2A8K0S8 358 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 KPNA7A9QM74 516 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 SMAPO00193 183 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 NDC80O14777 642 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 CHADO15335 359 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 KRT34O76011 436 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 CSH1P0DML2 217 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 CSH2P0DML3 217 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 ETS2P15036 469 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 SP100P23497 879 aaPredicted RBP17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 PGGT1BP53609 377 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 SLC25A3Q00325 362 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 GRIK3Q13003 919 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 KYAT1Q16773 422 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 PPP1R14CQ8TAE6 165 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 PYDC1Q8WXC3 89 aa17.05■□□□□ 0.32
CCDC88B-210ENST00000494566 ZFP42Q96MM3 310 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms