RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 SART1O43290 800 aaKnown RBP18.86■□□□□ 0.61
COL9A3-214ENST00000490398 ACSL4O60488 711 aa18.86■□□□□ 0.61
COL9A3-214ENST00000490398 CDH5P33151 784 aaPredicted RBP18.86■□□□□ 0.61
COL9A3-214ENST00000490398 DGKEP52429 567 aa18.86■□□□□ 0.61
COL9A3-214ENST00000490398 BPIFB4P59827 614 aa18.86■□□□□ 0.61
COL9A3-214ENST00000490398 UBXN1Q04323 297 aa18.86■□□□□ 0.61
COL9A3-214ENST00000490398 EIF4EBP2Q13542 120 aaPredicted RBP18.86■□□□□ 0.61
COL9A3-214ENST00000490398 ADGRF1Q5T601 910 aa18.86■□□□□ 0.61
COL9A3-214ENST00000490398 TMEM215Q68D42 235 aa18.86■□□□□ 0.61
COL9A3-214ENST00000490398 SMYD5Q6GMV2 418 aa18.86■□□□□ 0.61
COL9A3-214ENST00000490398 RASSF3Q86WH2 238 aa18.86■□□□□ 0.61
COL9A3-214ENST00000490398 MDGA1Q8NFP4 955 aa18.86■□□□□ 0.61
COL9A3-214ENST00000490398 CCDC26Q8TAB7 109 aa18.86■□□□□ 0.61
COL9A3-214ENST00000490398 WFDC5Q8TCV5 224 aa18.86■□□□□ 0.61
COL9A3-214ENST00000490398 GAB3Q8WWW8 586 aa18.86■□□□□ 0.61
COL9A3-214ENST00000490398 RUBCNQ92622 972 aa18.86■□□□□ 0.61
COL9A3-214ENST00000490398 PRICKLE1Q96MT3 831 aaPredicted RBP18.86■□□□□ 0.61
COL9A3-214ENST00000490398 SLC2A13Q96QE2 648 aa18.86■□□□□ 0.61
COL9A3-214ENST00000490398 BPIFA3Q9BQP9 254 aa18.86■□□□□ 0.61
COL9A3-214ENST00000490398 CD248Q9HCU0 757 aa18.86■□□□□ 0.61
COL9A3-214ENST00000490398 CALCOCO1Q9P1Z2 691 aa18.86■□□□□ 0.61
COL9A3-214ENST00000490398 EBF1Q9UH73 591 aa18.86■□□□□ 0.61
COL9A3-214ENST00000490398 NOCTQ9UK39 431 aaKnown RBP18.86■□□□□ 0.61
COL9A3-214ENST00000490398 CCDC163A0A0D9SF12 145 aa18.85■□□□□ 0.61
COL9A3-214ENST00000490398 A0A1W2PQF6 199 aa18.85■□□□□ 0.61
COL9A3-214ENST00000490398 IRAK2O43187 625 aa18.85■□□□□ 0.61
COL9A3-214ENST00000490398 TRUB2O95900 331 aaKnown RBP18.85■□□□□ 0.61
COL9A3-214ENST00000490398 MOCS2O96007 188 aaPredicted RBP18.85■□□□□ 0.61
COL9A3-214ENST00000490398 RING1Q06587 406 aa18.85■□□□□ 0.61
COL9A3-214ENST00000490398 IQCB1Q15051 598 aa18.85■□□□□ 0.61
COL9A3-214ENST00000490398 KLHL40Q2TBA0 621 aa18.85■□□□□ 0.61
COL9A3-214ENST00000490398 DCAF6Q58WW2 860 aa18.85■□□□□ 0.61
COL9A3-214ENST00000490398 ZC3H12AQ5D1E8 599 aaKnown RBP18.85■□□□□ 0.61
COL9A3-214ENST00000490398 OTUD1Q5VV17 481 aaPredicted RBP18.85■□□□□ 0.61
COL9A3-214ENST00000490398 KBTBD6Q86V97 674 aa18.85■□□□□ 0.61
COL9A3-214ENST00000490398 FRMD1Q8N878 549 aa18.85■□□□□ 0.61
COL9A3-214ENST00000490398 SORCS1Q8WY21 1168 aa18.85■□□□□ 0.61
COL9A3-214ENST00000490398 SERPINB11Q96P15 392 aa18.85■□□□□ 0.61
COL9A3-214ENST00000490398 HINFPQ9BQA5 517 aa18.85■□□□□ 0.61
COL9A3-214ENST00000490398 NUCKS1Q9H1E3 243 aaKnown RBP18.85■□□□□ 0.61
COL9A3-214ENST00000490398 PDCL3Q9H2J4 239 aa18.85■□□□□ 0.61
COL9A3-214ENST00000490398 PARD6AQ9NPB6 346 aa18.85■□□□□ 0.61
COL9A3-214ENST00000490398 CACNA2D2Q9NY47 1150 aa18.85■□□□□ 0.61
COL9A3-214ENST00000490398 NCDNQ9UBB6 729 aa18.85■□□□□ 0.61
COL9A3-214ENST00000490398 TLR6Q9Y2C9 796 aa18.85■□□□□ 0.61
COL9A3-214ENST00000490398 SLC27A6Q9Y2P4 619 aa18.85■□□□□ 0.61
COL9A3-214ENST00000490398 RAD54BQ9Y620 910 aa18.85■□□□□ 0.61
COL9A3-214ENST00000490398 RPP40O75818 363 aaKnown RBP18.84■□□□□ 0.61
COL9A3-214ENST00000490398 LATS1O95835 1130 aa18.84■□□□□ 0.61
COL9A3-214ENST00000490398 CYBBP04839 570 aa18.84■□□□□ 0.61
COL9A3-214ENST00000490398 TPM2P07951 284 aa18.84■□□□□ 0.61
COL9A3-214ENST00000490398 TFE3P19532 575 aaPredicted RBP18.84■□□□□ 0.61
COL9A3-214ENST00000490398 TGM1P22735 817 aa18.84■□□□□ 0.61
COL9A3-214ENST00000490398 CNR2P34972 360 aa18.84■□□□□ 0.61
COL9A3-214ENST00000490398 SOX5P35711 763 aa18.84■□□□□ 0.61
COL9A3-214ENST00000490398 SLC6A3Q01959 620 aa18.84■□□□□ 0.61
COL9A3-214ENST00000490398 MPPE1Q53F39 396 aa18.84■□□□□ 0.61
COL9A3-214ENST00000490398 EOGTQ5NDL2 527 aa18.84■□□□□ 0.61
COL9A3-214ENST00000490398 PIK3R6Q5UE93 754 aa18.84■□□□□ 0.61
COL9A3-214ENST00000490398 NUGGCQ68CJ6 796 aa18.84■□□□□ 0.61
COL9A3-214ENST00000490398 KIAA1211LQ6NV74 962 aa18.84■□□□□ 0.61
COL9A3-214ENST00000490398 CEP68Q76N32 757 aa18.84■□□□□ 0.61
COL9A3-214ENST00000490398 UNC45BQ8IWX7 931 aa18.84■□□□□ 0.61
COL9A3-214ENST00000490398 KIAA2013Q8IYS2 634 aa18.84■□□□□ 0.61
COL9A3-214ENST00000490398 FAM160A2Q8N612 972 aaPredicted RBP18.84■□□□□ 0.61
COL9A3-214ENST00000490398 CPA5Q8WXQ8 436 aa18.84■□□□□ 0.61
COL9A3-214ENST00000490398 TMA16Q96EY4 203 aaKnown RBP18.84■□□□□ 0.61
COL9A3-214ENST00000490398 PCMTD1Q96MG8 357 aaPredicted RBP18.84■□□□□ 0.61
COL9A3-214ENST00000490398 ERGIC2Q96RQ1 377 aa18.84■□□□□ 0.61
COL9A3-214ENST00000490398 SYNJ2BP-COX16A0A087WUM0 186 aa18.83■□□□□ 0.6
COL9A3-214ENST00000490398 TBL1XO60907 577 aa18.83■□□□□ 0.6
COL9A3-214ENST00000490398 HLA-FP30511 346 aa18.83■□□□□ 0.6
COL9A3-214ENST00000490398 NTSR1P30989 418 aa18.83■□□□□ 0.6
COL9A3-214ENST00000490398 ZNF165P49910 485 aa18.83■□□□□ 0.6
COL9A3-214ENST00000490398 NOMO3P69849 1222 aa18.83■□□□□ 0.6
COL9A3-214ENST00000490398 FMO1Q01740 532 aa18.83■□□□□ 0.6
COL9A3-214ENST00000490398 PREPLQ4J6C6 727 aaPredicted RBP18.83■□□□□ 0.6
COL9A3-214ENST00000490398 EFHC1Q5JVL4 640 aa18.83■□□□□ 0.6
COL9A3-214ENST00000490398 RNF43Q68DV7 783 aa18.83■□□□□ 0.6
COL9A3-214ENST00000490398 CHPFQ8IZ52 775 aa18.83■□□□□ 0.6
COL9A3-214ENST00000490398 TMEM35BQ8NCS4 154 aa18.83■□□□□ 0.6
COL9A3-214ENST00000490398 NEK11Q8NG66 645 aa18.83■□□□□ 0.6
COL9A3-214ENST00000490398 AZIN2Q96A70 460 aa18.83■□□□□ 0.6
COL9A3-214ENST00000490398 NOX5Q96PH1 765 aa18.83■□□□□ 0.6
COL9A3-214ENST00000490398 PCDHB18PQ96TA0 734 aa18.83■□□□□ 0.6
COL9A3-214ENST00000490398 SLC6A17Q9H1V8 727 aa18.83■□□□□ 0.6
COL9A3-214ENST00000490398 ASNSD1Q9NWL6 643 aa18.83■□□□□ 0.6
COL9A3-214ENST00000490398 COX16Q9P0S2 106 aa18.83■□□□□ 0.6
COL9A3-214ENST00000490398 EML5Q05BV3 1969 aa18.82■□□□□ 0.6
COL9A3-214ENST00000490398 TCRBV21S2A2A0A5A6 115 aa18.82■□□□□ 0.6
COL9A3-214ENST00000490398 HSF2BPO75031 334 aa18.82■□□□□ 0.6
COL9A3-214ENST00000490398 GLI1P08151 1106 aa18.82■□□□□ 0.6
COL9A3-214ENST00000490398 HOXB2P14652 356 aa18.82■□□□□ 0.6
COL9A3-214ENST00000490398 BCKDHBP21953 392 aa18.82■□□□□ 0.6
COL9A3-214ENST00000490398 GABRB2P47870 512 aa18.82■□□□□ 0.6
COL9A3-214ENST00000490398 SLC11A2P49281 568 aa18.82■□□□□ 0.6
COL9A3-214ENST00000490398 RNASE9P60153 205 aaKnown RBP18.82■□□□□ 0.6
COL9A3-214ENST00000490398 RPS24P62847 133 aaKnown RBP18.82■□□□□ 0.6
COL9A3-214ENST00000490398 NNTQ13423 1086 aa18.82■□□□□ 0.6
COL9A3-214ENST00000490398 HSF5Q4G112 596 aaPredicted RBP18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms