RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 PSMA2P25787 234 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 CCR1P32246 355 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 RDXP35241 583 aaKnown RBP10.71□□□□□ -0.69
SKA1-204ENST00000488454 NAP1L1P55209 391 aaKnown RBP10.71□□□□□ -0.69
SKA1-204ENST00000488454 RPL7AP62424 266 aaKnown RBP10.71□□□□□ -0.69
SKA1-204ENST00000488454 ATP11AP98196 1134 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 ZP2Q05996 745 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 KIF5AQ12840 1032 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 MTA1Q13330 715 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 NNTQ13423 1086 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 TRIP4Q15650 581 aaPredicted RBP10.71□□□□□ -0.69
SKA1-204ENST00000488454 CDO1Q16878 200 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 CCDC14Q49A88 953 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 NUGGCQ68CJ6 796 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 DESI1Q6ICB0 168 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 STRADAQ7RTN6 431 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 TAC4Q86UU9 113 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 MFSD6LQ8IWD5 586 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 ACRBPQ8NEB7 543 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 ST13P5Q8NFI4 369 aaPredicted RBP10.71□□□□□ -0.69
SKA1-204ENST00000488454 SLC35G2Q8TBE7 412 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 ZNF564Q8TBZ8 553 aaPredicted RBP10.71□□□□□ -0.69
SKA1-204ENST00000488454 DEPDC1BQ8WUY9 529 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 FGF14Q92915 247 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 PLD4Q96BZ4 506 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 ARHGEF26Q96DR7 871 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 TBCBQ99426 244 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 NPY6RQ99463 290 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 NCAPGQ9BPX3 1015 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 KXD1Q9BQD3 176 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 CNPY3Q9BT09 278 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 TRMT61BQ9BVS5 477 aaKnown RBP10.71□□□□□ -0.69
SKA1-204ENST00000488454 WDCPQ9H6R7 721 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 KCNK12Q9HB15 430 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.71□□□□□ -0.69
SKA1-204ENST00000488454 TBC1D14Q9P2M4 693 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 IP6K2Q9UHH9 426 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 ANAPC7Q9UJX3 599 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 CCL26Q9Y258 94 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 NUMBLQ9Y6R0 609 aa10.71□□□□□ -0.69
SKA1-204ENST00000488454 REV3LO60673 3130 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 MSI1O43347 362 aaKnown RBP10.7□□□□□ -0.7
SKA1-204ENST00000488454 STC2O76061 302 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 CCDC175P0C221 793 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 TCF3P15923 654 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 CORO1AP31146 461 aaKnown RBP10.7□□□□□ -0.7
SKA1-204ENST00000488454 PTPN9P43378 593 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 IFNAR2P48551 515 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 SLC11A2P49281 568 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 VAV2P52735 878 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 CCZ1BP86790 482 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 CCZ1P86791 482 aaPredicted RBP10.7□□□□□ -0.7
SKA1-204ENST00000488454 RING1Q06587 406 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 HTR4Q13639 388 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 PIGHQ14442 188 aaPredicted RBP10.7□□□□□ -0.7
SKA1-204ENST00000488454 ACAP1Q15027 740 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 ARL13BQ3SXY8 428 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 ARHGAP29Q52LW3 1261 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 SCYL2Q6P3W7 929 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 HTR3DQ70Z44 454 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 SLC44A3Q8N4M1 653 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 KIAA1958Q8N8K9 716 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 ATP6V0D2Q8N8Y2 350 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 FNIP1Q8TF40 1166 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 FAM172AQ8WUF8 416 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 RFFLQ8WZ73 363 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 NT5C3BQ969T7 300 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 PGAP3Q96FM1 320 aaPredicted RBP10.7□□□□□ -0.7
SKA1-204ENST00000488454 CALR3Q96L12 384 aaKnown RBP10.7□□□□□ -0.7
SKA1-204ENST00000488454 ZNF830Q96NB3 372 aaPredicted RBP10.7□□□□□ -0.7
SKA1-204ENST00000488454 DDX50Q9BQ39 737 aaKnown RBP10.7□□□□□ -0.7
SKA1-204ENST00000488454 DESI2Q9BSY9 194 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 TSGA10Q9BZW7 698 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 DUS2Q9NX74 493 aaKnown RBP10.7□□□□□ -0.7
SKA1-204ENST00000488454 EYSQ5T1H1 3165 aa10.7□□□□□ -0.7
SKA1-204ENST00000488454 XIRP2A4UGR9 3374 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 BRWD1Q9NSI6 2320 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 CHADO15335 359 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 IRAK2O43187 625 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 CCP110O43303 1012 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 IGLV3-25P01717 112 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 FCARP24071 287 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 GDI1P31150 447 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 ARHGAP25P42331 645 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 SSR1P43307 286 aaKnown RBP10.69□□□□□ -0.7
SKA1-204ENST00000488454 PITX1P78337 314 aaPredicted RBP10.69□□□□□ -0.7
SKA1-204ENST00000488454 ZXDBP98169 803 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 TDGQ13569 410 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 GRM2Q14416 872 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 PPP2R5DQ14738 602 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 LAPTM4AQ15012 233 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 PDGFRLQ15198 375 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 ZNF77Q15935 545 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 IFI16Q16666 785 aaKnown RBP10.69□□□□□ -0.7
SKA1-204ENST00000488454 PTPRNQ16849 979 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 C15orf59Q2T9L4 293 aaPredicted RBP10.69□□□□□ -0.7
SKA1-204ENST00000488454 ZC3H12AQ5D1E8 599 aaKnown RBP10.69□□□□□ -0.7
SKA1-204ENST00000488454 BRMS1LQ5PSV4 323 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 TRNP1Q6NT89 227 aa10.69□□□□□ -0.7
SKA1-204ENST00000488454 VITQ6UXI7 678 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms