RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 CNGB3Q9NQW8 809 aa22.51■■□□□ 1.19
USP40-215ENST00000484528 ABCC13Q9NSE7 274 aa22.51■■□□□ 1.19
USP40-215ENST00000484528 WDR3Q9UNX4 943 aaKnown RBP eCLIP22.51■■□□□ 1.19
USP40-215ENST00000484528 HBS1LQ9Y450 684 aaKnown RBP22.51■■□□□ 1.19
USP40-215ENST00000484528 MUC22E2RYF6 1773 aaPredicted RBP22.5■■□□□ 1.19
USP40-215ENST00000484528 HOXD9P28356 352 aaPredicted RBP22.5■■□□□ 1.19
USP40-215ENST00000484528 DPP6P42658 865 aa22.5■■□□□ 1.19
USP40-215ENST00000484528 ZNF234Q14588 700 aa22.5■■□□□ 1.19
USP40-215ENST00000484528 PEAR1Q5VY43 1037 aaPredicted RBP22.5■■□□□ 1.19
USP40-215ENST00000484528 TMEM215Q68D42 235 aa22.5■■□□□ 1.19
USP40-215ENST00000484528 SLC23A3Q6PIS1 610 aa22.5■■□□□ 1.19
USP40-215ENST00000484528 ELOA2Q8IYF1 753 aaPredicted RBP22.5■■□□□ 1.19
USP40-215ENST00000484528 DEFB124Q8NES8 71 aa22.5■■□□□ 1.19
USP40-215ENST00000484528 CLEC4CQ8WTT0 213 aa22.5■■□□□ 1.19
USP40-215ENST00000484528 GTPBP2Q9BX10 602 aaKnown RBP22.5■■□□□ 1.19
USP40-215ENST00000484528 MKRN2Q9H000 416 aaKnown RBP22.5■■□□□ 1.19
USP40-215ENST00000484528 ELOVL2Q9NXB9 296 aa22.5■■□□□ 1.19
USP40-215ENST00000484528 BICDL2A1A5D9 508 aa22.49■■□□□ 1.19
USP40-215ENST00000484528 PMM2O15305 246 aa22.49■■□□□ 1.19
USP40-215ENST00000484528 NDUFS2O75306 463 aa22.49■■□□□ 1.19
USP40-215ENST00000484528 PRKCHP24723 683 aa22.49■■□□□ 1.19
USP40-215ENST00000484528 CETN1Q12798 172 aa22.49■■□□□ 1.19
USP40-215ENST00000484528 DUOXA1Q1HG43 343 aa22.49■■□□□ 1.19
USP40-215ENST00000484528 MPPE1Q53F39 396 aa22.49■■□□□ 1.19
USP40-215ENST00000484528 SLC35F5Q8WV83 523 aa22.49■■□□□ 1.19
USP40-215ENST00000484528 PRDM16Q9HAZ2 1276 aa22.49■■□□□ 1.19
USP40-215ENST00000484528 SLC6A14Q9UN76 642 aa22.49■■□□□ 1.19
USP40-215ENST00000484528 HOXD12P35452 270 aa22.48■■□□□ 1.19
USP40-215ENST00000484528 SGSHP51688 502 aa22.48■■□□□ 1.19
USP40-215ENST00000484528 ATXN3P54252 364 aaPredicted RBP22.48■■□□□ 1.19
USP40-215ENST00000484528 PAK1Q13153 545 aa22.48■■□□□ 1.19
USP40-215ENST00000484528 ENPP2Q13822 863 aa22.48■■□□□ 1.19
USP40-215ENST00000484528 CNGA2Q16280 664 aa22.48■■□□□ 1.19
USP40-215ENST00000484528 TRIM59Q8IWR1 403 aa22.48■■□□□ 1.19
USP40-215ENST00000484528 RGL4Q8IZJ4 473 aa22.48■■□□□ 1.19
USP40-215ENST00000484528 OR2I1PQ8NGU4 316 aa22.48■■□□□ 1.19
USP40-215ENST00000484528 KREMEN1Q96MU8 473 aa22.48■■□□□ 1.19
USP40-215ENST00000484528 SLC2A11Q9BYW1 496 aa22.48■■□□□ 1.19
USP40-215ENST00000484528 MIS12Q9H081 205 aa22.48■■□□□ 1.19
USP40-215ENST00000484528 IGF2RP11717 2491 aa22.48■■□□□ 1.19
USP40-215ENST00000484528 P4HA2O15460 535 aa22.47■■□□□ 1.19
USP40-215ENST00000484528 SYNCRIPO60506 623 aaKnown RBP22.47■■□□□ 1.19
USP40-215ENST00000484528 KRT37O76014 449 aa22.47■■□□□ 1.19
USP40-215ENST00000484528 LTFP02788 710 aa22.47■■□□□ 1.19
USP40-215ENST00000484528 HLA-EP13747 358 aa22.47■■□□□ 1.19
USP40-215ENST00000484528 CSRP1P21291 193 aaKnown RBP22.47■■□□□ 1.19
USP40-215ENST00000484528 HLA-FP30511 346 aa22.47■■□□□ 1.19
USP40-215ENST00000484528 ARID5AQ03989 594 aa22.47■■□□□ 1.19
USP40-215ENST00000484528 GFPT1Q06210 699 aaPredicted RBP22.47■■□□□ 1.19
USP40-215ENST00000484528 KCNH2Q12809 1159 aa22.47■■□□□ 1.19
USP40-215ENST00000484528 FOXC1Q12948 553 aa22.47■■□□□ 1.19
USP40-215ENST00000484528 EIF4HQ15056 248 aaKnown RBP22.47■■□□□ 1.19
USP40-215ENST00000484528 ST3GAL2Q16842 350 aa22.47■■□□□ 1.19
USP40-215ENST00000484528 MSANTD2Q6P1R3 559 aa22.47■■□□□ 1.19
USP40-215ENST00000484528 RFWD3Q6PCD5 774 aa22.47■■□□□ 1.19
USP40-215ENST00000484528 SERPINA13PQ6UXR4 307 aa22.47■■□□□ 1.19
USP40-215ENST00000484528 SCML4Q8N228 414 aa22.47■■□□□ 1.19
USP40-215ENST00000484528 EHBP1Q8NDI1 1231 aa22.47■■□□□ 1.19
USP40-215ENST00000484528 TMA16Q96EY4 203 aaKnown RBP22.47■■□□□ 1.19
USP40-215ENST00000484528 TOE1Q96GM8 510 aaKnown RBP22.47■■□□□ 1.19
USP40-215ENST00000484528 SRRTQ9BXP5 876 aaKnown RBP22.47■■□□□ 1.19
USP40-215ENST00000484528 INTS2Q9H0H0 1204 aaKnown RBP22.47■■□□□ 1.19
USP40-215ENST00000484528 CAPN10Q9HC96 672 aa22.47■■□□□ 1.19
USP40-215ENST00000484528 FRYQ5TBA9 3013 aa22.47■■□□□ 1.19
USP40-215ENST00000484528 GOLGA6L7A0A1B0GV03 622 aa22.46■■□□□ 1.19
USP40-215ENST00000484528 KCNJ18B7U540 433 aa22.46■■□□□ 1.19
USP40-215ENST00000484528 NPC1O15118 1278 aa22.46■■□□□ 1.19
USP40-215ENST00000484528 AFPP02771 609 aaKnown RBP22.46■■□□□ 1.19
USP40-215ENST00000484528 EPHX1P07099 455 aa22.46■■□□□ 1.19
USP40-215ENST00000484528 SERPINF2P08697 491 aa22.46■■□□□ 1.19
USP40-215ENST00000484528 KRT5P13647 590 aa22.46■■□□□ 1.19
USP40-215ENST00000484528 MAOBP27338 520 aa22.46■■□□□ 1.19
USP40-215ENST00000484528 CD6P30203 668 aa22.46■■□□□ 1.19
USP40-215ENST00000484528 ZNF132P52740 706 aa22.46■■□□□ 1.19
USP40-215ENST00000484528 SHC2P98077 582 aa22.46■■□□□ 1.19
USP40-215ENST00000484528 GCNT1Q02742 428 aa22.46■■□□□ 1.19
USP40-215ENST00000484528 STILQ15468 1287 aa22.46■■□□□ 1.19
USP40-215ENST00000484528 ADGRF1Q5T601 910 aa22.46■■□□□ 1.19
USP40-215ENST00000484528 TMPRSS6Q8IU80 811 aa22.46■■□□□ 1.19
USP40-215ENST00000484528 ZNF366Q8N895 744 aa22.46■■□□□ 1.19
USP40-215ENST00000484528 CEP76Q8TAP6 659 aa22.46■■□□□ 1.19
USP40-215ENST00000484528 CYB5D2Q8WUJ1 264 aa22.46■■□□□ 1.19
USP40-215ENST00000484528 IRGQQ8WZA9 623 aa22.46■■□□□ 1.19
USP40-215ENST00000484528 ABCB8Q9NUT2 735 aa22.46■■□□□ 1.19
USP40-215ENST00000484528 UTP18Q9Y5J1 556 aaKnown RBP eCLIP22.46■■□□□ 1.19
USP40-215ENST00000484528 KNL1Q8NG31 2342 aa22.46■■□□□ 1.19
USP40-215ENST00000484528 NCAM1P13591 858 aa22.45■■□□□ 1.18
USP40-215ENST00000484528 COPAP53621 1224 aa22.45■■□□□ 1.18
USP40-215ENST00000484528 FOXR2Q6PJQ5 311 aa22.45■■□□□ 1.18
USP40-215ENST00000484528 CHST9Q7L1S5 443 aa22.45■■□□□ 1.18
USP40-215ENST00000484528 WFDC5Q8TCV5 224 aa22.45■■□□□ 1.18
USP40-215ENST00000484528 GOLGA1Q92805 767 aa22.45■■□□□ 1.18
USP40-215ENST00000484528 SIPA1Q96FS4 1042 aa22.45■■□□□ 1.18
USP40-215ENST00000484528 ZNF419Q96HQ0 510 aaPredicted RBP22.45■■□□□ 1.18
USP40-215ENST00000484528 GPR174Q9BXC1 333 aa22.45■■□□□ 1.18
USP40-215ENST00000484528 ST7Q9NRC1 585 aa22.45■■□□□ 1.18
USP40-215ENST00000484528 USP36Q9P275 1121 aaKnown RBP22.45■■□□□ 1.18
USP40-215ENST00000484528 STOML2Q9UJZ1 356 aa22.45■■□□□ 1.18
USP40-215ENST00000484528 MEI4A8MW99 385 aa22.44■■□□□ 1.18
USP40-215ENST00000484528 LATS1O95835 1130 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms