RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 CEACAM1P13688 526 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 PRKCSHP14314 528 aaPredicted RBP12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 BMP6P22004 513 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 RPL34P49207 117 aaKnown RBP12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 IRX4P78413 519 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 ZNF33AQ06730 810 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 KCNH2Q12809 1159 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 LRMPQ12912 555 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 GEN1Q17RS7 908 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 KIAA1211LQ6NV74 962 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 BEND5Q7L4P6 421 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.66□□□□□ -0.381e-7■□□□□ 10.8
SQSTM1-207ENST00000481335 RBBP8NLQ8NC74 664 aaPredicted RBP12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 EHBP1Q8NDI1 1231 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 UBA3Q8TBC4 463 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 BHMTQ93088 406 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 ELOVL2Q9NXB9 296 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 CACNA2D2Q9NY47 1150 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 USP36Q9P275 1121 aaKnown RBP12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 SLC6A14Q9UN76 642 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 CTNND2Q9UQB3 1225 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 CEP295Q9C0D2 2601 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 KMT2BQ9UMN6 2715 aaPredicted RBP12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 PATE3B3GLJ2 98 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 MED7O43513 233 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 SYNCRIPO60506 623 aaKnown RBP12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 NDUFS2O75306 463 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 IGLV3-19P01714 112 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 LTFP02788 710 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 HOXD9P28356 352 aaPredicted RBP12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 OXTRP30559 389 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 IL12RB1P42701 662 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 WASP42768 502 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 ACADSBP45954 432 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 SLC11A2P49281 568 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 NOVA1P51513 510 aaKnown RBP12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 ARID5AQ03989 594 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 FUT11Q495W5 492 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 SYCP2LQ5T4T6 812 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 N4BP2L1Q5TBK1 243 aaPredicted RBP12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 PMF1Q6P1K2 205 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 AHI1Q8N157 1196 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 STK32AQ8WU08 396 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 TFAP2BQ92481 460 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 P2RY11Q96G91 374 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 ZNF419Q96HQ0 510 aaPredicted RBP12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 CNTNAP3BQ96NU0 1288 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 SERPINB11Q96P15 392 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 DDX50Q9BQ39 737 aaKnown RBP12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 CNTNAP3Q9BZ76 1288 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 PCED1AQ9H1Q7 454 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 PRDM16Q9HAZ2 1276 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 CAPN10Q9HC96 672 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 TMEM74BQ9NUR3 256 aa12.65□□□□□ -0.38
SQSTM1-207ENST00000481335 ADAMTS9Q9P2N4 1935 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 TYW5A2RUC4 315 aaKnown RBP12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 GTPBP10A4D1E9 387 aaKnown RBP12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 SYPP08247 313 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 NCAM1P13591 858 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 LCP1P13796 627 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 GNSP15586 552 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 ENGP17813 658 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 ITPKAP23677 461 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 BRD2P25440 801 aaKnown RBP12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 CD6P30203 668 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 ATXN3P54252 364 aaPredicted RBP12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 UBE2HP62256 183 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 GFPT1Q06210 699 aaPredicted RBP12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 ZNF234Q14588 700 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 WDR45BQ5MNZ6 344 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 ISM2Q6H9L7 571 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 PSAPL1Q6NUJ1 521 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 ARMCX6Q7L4S7 300 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 KIAA0907Q7Z7F0 614 aaPredicted RBP12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 FRMD1Q8N878 549 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 CADM4Q8NFZ8 388 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 EDEM1Q92611 657 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 PRCCQ92733 491 aaPredicted RBP12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 TMA16Q96EY4 203 aaKnown RBP12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 HSPA12BQ96MM6 686 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 SRRTQ9BXP5 876 aaKnown RBP12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 SLC32A1Q9H598 525 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 ITM2CQ9NQX7 267 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 SFMBT1Q9UHJ3 866 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 RWDD2AQ9UIY3 292 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 CYP8B1Q9UNU6 501 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 RAD54BQ9Y620 910 aa12.64□□□□□ -0.39
SQSTM1-207ENST00000481335 RNF225M0QZC1 329 aaPredicted RBP12.63□□□□□ -0.39
SQSTM1-207ENST00000481335 KCNA4P22459 653 aa12.63□□□□□ -0.39
SQSTM1-207ENST00000481335 HLA-FP30511 346 aa12.63□□□□□ -0.39
SQSTM1-207ENST00000481335 GPD2P43304 727 aa12.63□□□□□ -0.39
SQSTM1-207ENST00000481335 HNRNPDQ14103 355 aaKnown RBP12.63□□□□□ -0.39
SQSTM1-207ENST00000481335 SH3PXD2AQ5TCZ1 1133 aa12.63□□□□□ -0.39
SQSTM1-207ENST00000481335 KIAA1324Q6UXG2 1013 aaKnown RBP12.63□□□□□ -0.39
SQSTM1-207ENST00000481335 SERPINA13PQ6UXR4 307 aa12.63□□□□□ -0.39
SQSTM1-207ENST00000481335 RRAGAQ7L523 313 aa12.63□□□□□ -0.39
SQSTM1-207ENST00000481335 TMPRSS6Q8IU80 811 aa12.63□□□□□ -0.39
SQSTM1-207ENST00000481335 SLC41A1Q8IVJ1 513 aa12.63□□□□□ -0.39
SQSTM1-207ENST00000481335 ARHGEF19Q8IW93 802 aa12.63□□□□□ -0.39
SQSTM1-207ENST00000481335 NDRG1Q92597 394 aaKnown RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms