RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 PREPLQ4J6C6 727 aaPredicted RBP6.08□□□□□ -1.44
UPF3A-205ENST00000479712 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.08□□□□□ -1.44
UPF3A-205ENST00000479712 RAP1GAP2Q684P5 730 aa6.08□□□□□ -1.44
UPF3A-205ENST00000479712 MRNIPQ6NTE8 343 aa6.08□□□□□ -1.44
UPF3A-205ENST00000479712 MAMDC4Q6UXC1 1216 aa6.08□□□□□ -1.44
UPF3A-205ENST00000479712 Q6ZSN1 163 aa6.08□□□□□ -1.44
UPF3A-205ENST00000479712 GDF7Q7Z4P5 450 aa6.08□□□□□ -1.44
UPF3A-205ENST00000479712 GATAD2AQ86YP4 633 aa6.08□□□□□ -1.44
UPF3A-205ENST00000479712 MAPKAPK5Q8IW41 473 aa6.08□□□□□ -1.44
UPF3A-205ENST00000479712 RMDN1Q96DB5 314 aa6.08□□□□□ -1.44
UPF3A-205ENST00000479712 PRPF18Q99633 342 aaKnown RBP6.08□□□□□ -1.44
UPF3A-205ENST00000479712 ZCCHC4Q9H5U6 513 aa6.08□□□□□ -1.44
UPF3A-205ENST00000479712 TRPM5Q9NZQ8 1165 aa6.08□□□□□ -1.44
UPF3A-205ENST00000479712 KCNE5Q9UJ90 142 aa6.08□□□□□ -1.44
UPF3A-205ENST00000479712 GABRQQ9UN88 632 aa6.08□□□□□ -1.44
UPF3A-205ENST00000479712 SORCS3Q9UPU3 1222 aa6.08□□□□□ -1.44
UPF3A-205ENST00000479712 CHST2Q9Y4C5 530 aa6.08□□□□□ -1.44
UPF3A-205ENST00000479712 REV3LO60673 3130 aa6.08□□□□□ -1.44
UPF3A-205ENST00000479712 ADAMTS20P59510 1910 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 hCG_1984214I3L0E3 225 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 TRIM24O15164 1050 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 PRICKLE3O43900 615 aaPredicted RBP6.07□□□□□ -1.44
UPF3A-205ENST00000479712 SRGAP2O75044 1071 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 COQ9O75208 318 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 RECQL4O94761 1208 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 PECAM1P16284 738 aaPredicted RBP6.07□□□□□ -1.44
UPF3A-205ENST00000479712 MAPK9P45984 424 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 NDUFV1P49821 464 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 RALBP1Q15311 655 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 TMTC4Q5T4D3 741 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 LIN54Q6MZP7 749 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 JMJD6Q6NYC1 403 aaPredicted RBP6.07□□□□□ -1.44
UPF3A-205ENST00000479712 MZT2AQ6P582 158 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 RFX8Q6ZV50 586 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 TMPRSS9Q7Z410 1059 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 SPARTQ8N0X7 666 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 GALNT15Q8N3T1 639 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 Q8NA96 180 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 Q8TCH9 128 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 ZKSCAN4Q969J2 545 aaPredicted RBP6.07□□□□□ -1.44
UPF3A-205ENST00000479712 PPP2R3CQ969Q6 453 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 PTDSS2Q9BVG9 487 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 KATNAL1Q9BW62 490 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 SSBP3Q9BWW4 388 aaPredicted RBP6.07□□□□□ -1.44
UPF3A-205ENST00000479712 TEX101Q9BY14 249 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 ZBTB26Q9HCK0 441 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 ITM2CQ9NQX7 267 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 C9orf78Q9NZ63 289 aaPredicted RBP6.07□□□□□ -1.44
UPF3A-205ENST00000479712 HPSEQ9Y251 543 aa6.07□□□□□ -1.44
UPF3A-205ENST00000479712 MRPS17Q9Y2R5 130 aaKnown RBP6.07□□□□□ -1.44
UPF3A-205ENST00000479712 RTL9Q8NET4 1388 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 ABCC12Q96J65 1359 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 XDHP47989 1333 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 EVC2Q86UK5 1308 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 FAM186AA6NE01 2351 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 PRAMEF33A0A0G2JMD5 474 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 A0A1W2PS29 197 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 IRAK2O43187 625 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 PRAMEF10O60809 474 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 ZNF623O75123 536 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 SCAF4O95104 1147 aaKnown RBP6.06□□□□□ -1.44
UPF3A-205ENST00000479712 ELANEP08246 267 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 NPPBP16860 134 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 MST1P26927 711 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 PPIFP30405 207 aaKnown RBP6.06□□□□□ -1.44
UPF3A-205ENST00000479712 NSUN2Q08J23 767 aaKnown RBP eCLIP6.06□□□□□ -1.44
UPF3A-205ENST00000479712 SLC39A6Q13433 755 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 DYRK1AQ13627 763 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 TAF5Q15542 800 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 TIGD6Q17RP2 521 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 HS1BP3Q53T59 392 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 ARHGAP40Q5TG30 622 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 SULT6B1Q6IMI4 303 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 CCDC70Q6NSX1 233 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 LRRC55Q6ZSA7 311 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 DNAJB14Q8TBM8 379 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 STT3BQ8TCJ2 826 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 ATOH1Q92858 354 aaPredicted RBP6.06□□□□□ -1.44
UPF3A-205ENST00000479712 EID2BQ96D98 161 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 NELL2Q99435 816 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 MAF1Q9H063 256 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.06□□□□□ -1.44
UPF3A-205ENST00000479712 SLC25A32Q9H2D1 315 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 CXorf36Q9H7Y0 433 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 RRN3Q9NYV6 651 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 NDRG4Q9ULP0 352 aaKnown RBP6.06□□□□□ -1.44
UPF3A-205ENST00000479712 LZTS1Q9Y250 596 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 FPGT-TNNI3KV9GXZ4 949 aa6.06□□□□□ -1.44
UPF3A-205ENST00000479712 COL1A1P02452 1464 aaPredicted RBP6.06□□□□□ -1.44
UPF3A-205ENST00000479712 ADGRA2Q96PE1 1338 aa6.05□□□□□ -1.44
UPF3A-205ENST00000479712 CLSPNQ9HAW4 1339 aa6.05□□□□□ -1.44
UPF3A-205ENST00000479712 CCL15-CCL14A0A0B4J2E2 113 aa6.05□□□□□ -1.44
UPF3A-205ENST00000479712 KRTAP9-7A8MTY7 169 aa6.05□□□□□ -1.44
UPF3A-205ENST00000479712 F5H697 171 aa6.05□□□□□ -1.44
UPF3A-205ENST00000479712 IPO5O00410 1097 aaKnown RBP6.05□□□□□ -1.44
UPF3A-205ENST00000479712 TLR2O60603 784 aa6.05□□□□□ -1.44
UPF3A-205ENST00000479712 GLP2RO95838 553 aa6.05□□□□□ -1.44
UPF3A-205ENST00000479712 CFIP05156 583 aa6.05□□□□□ -1.44
UPF3A-205ENST00000479712 HLA-DOAP06340 250 aa6.05□□□□□ -1.44
UPF3A-205ENST00000479712 ITGA2BP08514 1039 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms