RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 IGLV3-25P01717 112 aa16.21■□□□□ 0.19
HMGA1-206ENST00000478214 CYP1A1P04798 512 aaPredicted RBP16.21■□□□□ 0.19
HMGA1-206ENST00000478214 CYBBP04839 570 aa16.21■□□□□ 0.19
HMGA1-206ENST00000478214 HOXA6P31267 233 aa16.21■□□□□ 0.19
HMGA1-206ENST00000478214 HOXD11P31277 338 aaPredicted RBP16.21■□□□□ 0.19
HMGA1-206ENST00000478214 GABRB2P47870 512 aa16.21■□□□□ 0.19
HMGA1-206ENST00000478214 SLC11A2P49281 568 aa16.21■□□□□ 0.19
HMGA1-206ENST00000478214 CDK17Q00537 523 aa16.21■□□□□ 0.19
HMGA1-206ENST00000478214 FANCCQ00597 558 aa16.21■□□□□ 0.19
HMGA1-206ENST00000478214 DMC1Q14565 340 aa16.21■□□□□ 0.19
HMGA1-206ENST00000478214 NR1I3Q14994 352 aa16.21■□□□□ 0.19
HMGA1-206ENST00000478214 MPPE1Q53F39 396 aa16.21■□□□□ 0.19
HMGA1-206ENST00000478214 FAM133BQ5BKY9 247 aaKnown RBP16.21■□□□□ 0.19
HMGA1-206ENST00000478214 ZC3H12AQ5D1E8 599 aaKnown RBP16.21■□□□□ 0.19
HMGA1-206ENST00000478214 RFWD3Q6PCD5 774 aa16.21■□□□□ 0.19
HMGA1-206ENST00000478214 XYLT1Q86Y38 959 aa16.21■□□□□ 0.19
HMGA1-206ENST00000478214 ALLCQ8N6M5 410 aa16.21■□□□□ 0.19
HMGA1-206ENST00000478214 IL17RCQ8NAC3 791 aa16.21■□□□□ 0.19
HMGA1-206ENST00000478214 ZNF397Q8NF99 534 aaPredicted RBP16.21■□□□□ 0.19
HMGA1-206ENST00000478214 TMA16Q96EY4 203 aaKnown RBP16.21■□□□□ 0.19
HMGA1-206ENST00000478214 HHIPQ96QV1 700 aa16.21■□□□□ 0.19
HMGA1-206ENST00000478214 PCDHB18PQ96TA0 734 aa16.21■□□□□ 0.19
HMGA1-206ENST00000478214 HCN2Q9UL51 889 aa16.21■□□□□ 0.19
HMGA1-206ENST00000478214 GPR179Q6PRD1 2367 aa16.2■□□□□ 0.18
HMGA1-206ENST00000478214 SYNJ2BP-COX16A0A087WUM0 186 aa16.2■□□□□ 0.18
HMGA1-206ENST00000478214 A0A1W2PQC6 194 aa16.2■□□□□ 0.18
HMGA1-206ENST00000478214 PRR23AA6NEV1 266 aa16.2■□□□□ 0.18
HMGA1-206ENST00000478214 PRRT4C9JH25 899 aa16.2■□□□□ 0.18
HMGA1-206ENST00000478214 GOLGA6L19H0YKK7 550 aa16.2■□□□□ 0.18
HMGA1-206ENST00000478214 DAB1O75553 588 aa16.2■□□□□ 0.18
HMGA1-206ENST00000478214 KLF8O95600 359 aaPredicted RBP16.2■□□□□ 0.18
HMGA1-206ENST00000478214 MOCS2O96007 188 aaPredicted RBP16.2■□□□□ 0.18
HMGA1-206ENST00000478214 SLC6A4P31645 630 aa16.2■□□□□ 0.18
HMGA1-206ENST00000478214 SGSHP51688 502 aa16.2■□□□□ 0.18
HMGA1-206ENST00000478214 RNASE9P60153 205 aaKnown RBP16.2■□□□□ 0.18
HMGA1-206ENST00000478214 EIF4EBP2Q13542 120 aaPredicted RBP16.2■□□□□ 0.18
HMGA1-206ENST00000478214 NFKBIBQ15653 356 aa16.2■□□□□ 0.18
HMGA1-206ENST00000478214 NADSYN1Q6IA69 706 aa16.2■□□□□ 0.18
HMGA1-206ENST00000478214 NUDT18Q6ZVK8 323 aa16.2■□□□□ 0.18
HMGA1-206ENST00000478214 ZDHHC17Q8IUH5 632 aa16.2■□□□□ 0.18
HMGA1-206ENST00000478214 TXNDC5Q8NBS9 432 aaKnown RBP16.2■□□□□ 0.18
HMGA1-206ENST00000478214 BAP1Q92560 729 aa16.2■□□□□ 0.18
HMGA1-206ENST00000478214 AZIN2Q96A70 460 aa16.2■□□□□ 0.18
HMGA1-206ENST00000478214 SEMA4AQ9H3S1 761 aa16.2■□□□□ 0.18
HMGA1-206ENST00000478214 FAM204AQ9H8W3 233 aa16.2■□□□□ 0.18
HMGA1-206ENST00000478214 DDIT4Q9NX09 232 aa16.2■□□□□ 0.18
HMGA1-206ENST00000478214 COX16Q9P0S2 106 aa16.2■□□□□ 0.18
HMGA1-206ENST00000478214 XPO7Q9UIA9 1087 aaKnown RBP16.2■□□□□ 0.18
HMGA1-206ENST00000478214 MMP17Q9ULZ9 603 aa16.2■□□□□ 0.18
HMGA1-206ENST00000478214 GOLGA8SH3BPF8 625 aa16.19■□□□□ 0.18
HMGA1-206ENST00000478214 SGK1O00141 431 aa16.19■□□□□ 0.18
HMGA1-206ENST00000478214 GFRA3O60609 400 aa16.19■□□□□ 0.18
HMGA1-206ENST00000478214 APOEP02649 317 aa16.19■□□□□ 0.18
HMGA1-206ENST00000478214 HOXD9P28356 352 aaPredicted RBP16.19■□□□□ 0.18
HMGA1-206ENST00000478214 NOS2P35228 1153 aa16.19■□□□□ 0.18
HMGA1-206ENST00000478214 ZNF445P59923 1031 aa16.19■□□□□ 0.18
HMGA1-206ENST00000478214 GEN1Q17RS7 908 aa16.19■□□□□ 0.18
HMGA1-206ENST00000478214 FAM102AQ5T9C2 384 aaPredicted RBP16.19■□□□□ 0.18
HMGA1-206ENST00000478214 PIK3R6Q5UE93 754 aa16.19■□□□□ 0.18
HMGA1-206ENST00000478214 EGFLAMQ63HQ2 1017 aa16.19■□□□□ 0.18
HMGA1-206ENST00000478214 TRIM72Q6ZMU5 477 aa16.19■□□□□ 0.18
HMGA1-206ENST00000478214 MMS22LQ6ZRQ5 1243 aa16.19■□□□□ 0.18
HMGA1-206ENST00000478214 LONP2Q86WA8 852 aa16.19■□□□□ 0.18
HMGA1-206ENST00000478214 CAMKK1Q8N5S9 505 aa16.19■□□□□ 0.18
HMGA1-206ENST00000478214 ZNF513Q8N8E2 541 aaPredicted RBP16.19■□□□□ 0.18
HMGA1-206ENST00000478214 MSANTD4Q8NCY6 345 aa16.19■□□□□ 0.18
HMGA1-206ENST00000478214 SLC30A5Q8TAD4 765 aa16.19■□□□□ 0.18
HMGA1-206ENST00000478214 MYEOVQ96EZ4 313 aa16.19■□□□□ 0.18
HMGA1-206ENST00000478214 SLC27A6Q9Y2P4 619 aa16.19■□□□□ 0.18
HMGA1-206ENST00000478214 STARD13Q9Y3M8 1113 aa16.19■□□□□ 0.18
HMGA1-206ENST00000478214 RIF1Q5UIP0 2472 aaKnown RBP16.19■□□□□ 0.18
HMGA1-206ENST00000478214 ADAM23O75077 832 aa16.18■□□□□ 0.18
HMGA1-206ENST00000478214 LMNAP02545 664 aaKnown RBP16.18■□□□□ 0.18
HMGA1-206ENST00000478214 HNRNPLP14866 589 aaKnown RBP eCLIP16.18■□□□□ 0.18
HMGA1-206ENST00000478214 FERP16591 822 aa16.18■□□□□ 0.18
HMGA1-206ENST00000478214 MMP8P22894 467 aa16.18■□□□□ 0.18
HMGA1-206ENST00000478214 GBP1P32455 592 aa16.18■□□□□ 0.18
HMGA1-206ENST00000478214 SCNN1AP37088 669 aa16.18■□□□□ 0.18
HMGA1-206ENST00000478214 MATKP42679 507 aa16.18■□□□□ 0.18
HMGA1-206ENST00000478214 SRSF5Q13243 272 aaKnown RBP16.18■□□□□ 0.18
HMGA1-206ENST00000478214 HSF5Q4G112 596 aaPredicted RBP16.18■□□□□ 0.18
HMGA1-206ENST00000478214 OTUD1Q5VV17 481 aaPredicted RBP16.18■□□□□ 0.18
HMGA1-206ENST00000478214 TMEM92Q6UXU6 159 aa16.18■□□□□ 0.18
HMGA1-206ENST00000478214 IRF2BP2Q7Z5L9 587 aa16.18■□□□□ 0.18
HMGA1-206ENST00000478214 WDR5BQ86VZ2 330 aa16.18■□□□□ 0.18
HMGA1-206ENST00000478214 TSTD1Q8NFU3 115 aa16.18■□□□□ 0.18
HMGA1-206ENST00000478214 ACOX2Q99424 681 aa16.18■□□□□ 0.18
HMGA1-206ENST00000478214 AGPAT1Q99943 283 aa16.18■□□□□ 0.18
HMGA1-206ENST00000478214 DDX50Q9BQ39 737 aaKnown RBP16.18■□□□□ 0.18
HMGA1-206ENST00000478214 C11orf70Q9BRQ4 267 aa16.18■□□□□ 0.18
HMGA1-206ENST00000478214 SLC2A11Q9BYW1 496 aa16.18■□□□□ 0.18
HMGA1-206ENST00000478214 ADAM33Q9BZ11 813 aa16.18■□□□□ 0.18
HMGA1-206ENST00000478214 NUCKS1Q9H1E3 243 aaKnown RBP16.18■□□□□ 0.18
HMGA1-206ENST00000478214 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.18■□□□□ 0.18
HMGA1-206ENST00000478214 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.18■□□□□ 0.18
HMGA1-206ENST00000478214 CALCOCO1Q9P1Z2 691 aa16.18■□□□□ 0.18
HMGA1-206ENST00000478214 MYO6Q9UM54 1294 aa16.18■□□□□ 0.18
HMGA1-206ENST00000478214 WDR87Q6ZQQ6 2873 aa16.18■□□□□ 0.18
HMGA1-206ENST00000478214 KIAA1549LQ6ZVL6 1849 aa16.17■□□□□ 0.18
HMGA1-206ENST00000478214 LRRC53A6NM62 1247 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms