RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 ACKR2O00590 384 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 HSPA4LO95757 839 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 POLBP06746 335 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 KRT19P08727 400 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 ARL4AP40617 200 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 SLC26A2P50443 739 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 STAT5BP51692 787 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 KPNA2P52292 529 aaKnown RBP6.3□□□□□ -1.4
HERC4-209ENST00000473533 EPHB1P54762 984 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 MTTPP55157 894 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 GAD2Q05329 585 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 MAPRE2Q15555 327 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 N4BP2L1Q5TBK1 243 aaPredicted RBP6.3□□□□□ -1.4
HERC4-209ENST00000473533 MROH9Q5TGP6 573 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 LRRC8BQ6P9F7 803 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 SCARA5Q6ZMJ2 495 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 PQLC1Q8N2U9 271 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 RP9Q8TA86 221 aaKnown RBP6.3□□□□□ -1.4
HERC4-209ENST00000473533 RXFP2Q8WXD0 754 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 ITFG2Q969R8 447 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 LENG1Q96BZ8 264 aaPredicted RBP6.3□□□□□ -1.4
HERC4-209ENST00000473533 C12orf42Q96LP6 360 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 QKIQ96PU8 341 aaKnown RBP eCLIP6.3□□□□□ -1.42e-6■■■■■ 30.4
HERC4-209ENST00000473533 CPXM1Q96SM3 734 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 EBF3Q9H4W6 596 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 SMYD3Q9H7B4 428 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 HOXC10Q9NYD6 342 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 PPM1HQ9ULR3 514 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 PHF24Q9UPV7 400 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 ANKRD6Q9Y2G4 727 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 PCDHB12Q9Y5F1 795 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 RAD54BQ9Y620 910 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 WDR81Q562E7 1941 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 DCAF8L1A6NGE4 600 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 H3BNX3 289 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 TIMM44O43615 452 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 CILPO75339 1184 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 CST3P01034 146 aaPredicted RBP6.3□□□□□ -1.4
HERC4-209ENST00000473533 COX4I1P13073 169 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 RAG1P15918 1043 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 NCF2P19878 526 aaPredicted RBP6.3□□□□□ -1.4
HERC4-209ENST00000473533 RBL1P28749 1068 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 ALDH1A3P47895 512 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 NR1H2P55055 460 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 TARBP2Q15633 366 aaKnown RBP6.3□□□□□ -1.4
HERC4-209ENST00000473533 ATF7IP2Q5U623 682 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 SCARA3Q6AZY7 606 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 LCLAT1Q6UWP7 414 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 ZBTB33Q86T24 672 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 CAND1Q86VP6 1230 aaKnown RBP6.3□□□□□ -1.4
HERC4-209ENST00000473533 CROCCP3Q8IVE0 287 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 GSTCDQ8NEC7 633 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 NLRP7Q8WX94 980 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 SEPT1Q8WYJ6 367 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 TOP1MTQ969P6 601 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 ELMO3Q96BJ8 720 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 SIGLEC10Q96LC7 697 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 HEXIM2Q96MH2 286 aaKnown RBP6.3□□□□□ -1.4
HERC4-209ENST00000473533 EPAS1Q99814 870 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 EFHD1Q9BUP0 239 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 TMEM39BQ9GZU3 492 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 XYLT2Q9H1B5 865 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 ZNF696Q9H7X3 374 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 PIDD1Q9HB75 910 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 PICK1Q9NRD5 415 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 PRMT7Q9NVM4 692 aaPredicted RBP6.3□□□□□ -1.4
HERC4-209ENST00000473533 CHCHD3Q9NX63 227 aaKnown RBP6.3□□□□□ -1.4
HERC4-209ENST00000473533 MARCOQ9UEW3 520 aaPredicted RBP6.3□□□□□ -1.4
HERC4-209ENST00000473533 BARX2Q9UMQ3 279 aaPredicted RBP6.3□□□□□ -1.4
HERC4-209ENST00000473533 POMPQ9Y244 141 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 SQORQ9Y6N5 450 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 NUMBLQ9Y6R0 609 aa6.3□□□□□ -1.4
HERC4-209ENST00000473533 C15orf38-AP3S2A0A0A6YYH1 394 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.29□□□□□ -1.4
HERC4-209ENST00000473533 MSCO60682 206 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 C1QAP02745 245 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 PROCP04070 461 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 HOXC6P09630 235 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 CSH1P0DML2 217 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 CSH2P0DML3 217 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 MCF2P10911 925 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 CYP2C9P11712 490 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 TYK2P29597 1187 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 PTPN9P43378 593 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 HDAC4P56524 1084 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 SP4Q02446 784 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 FOLH1Q04609 750 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 POU5F1BQ06416 359 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 DPYSQ14117 519 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 FOXB2Q5VYV0 432 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 CASC4Q6P4E1 433 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 PACS1Q6VY07 963 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 BNC2Q6ZN30 1099 aaPredicted RBP6.29□□□□□ -1.4
HERC4-209ENST00000473533 CDHR3Q6ZTQ4 885 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 RAPH1Q70E73 1250 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 ARPINQ7Z6K5 226 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 KBTBD6Q86V97 674 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 NIM1KQ8IY84 436 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 DEFB107AQ8IZN7 70 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 ARFGAP1Q8N6T3 406 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms