RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 ZNF217O75362 1048 aa19.62■□□□□ 0.73
CCDC88B-206ENST00000473405 CYBBP04839 570 aa19.62■□□□□ 0.73
CCDC88B-206ENST00000473405 HARS2P49590 506 aaKnown RBP19.62■□□□□ 0.73
CCDC88B-206ENST00000473405 MARSP56192 900 aaKnown RBP19.62■□□□□ 0.73
CCDC88B-206ENST00000473405 STX17P56962 302 aa19.62■□□□□ 0.73
CCDC88B-206ENST00000473405 GCNT1Q02742 428 aa19.62■□□□□ 0.73
CCDC88B-206ENST00000473405 CNGA2Q16280 664 aa19.62■□□□□ 0.73
CCDC88B-206ENST00000473405 DAB2IPQ5VWQ8 1189 aa19.62■□□□□ 0.73
CCDC88B-206ENST00000473405 MSANTD2Q6P1R3 559 aa19.62■□□□□ 0.73
CCDC88B-206ENST00000473405 SLC23A3Q6PIS1 610 aa19.62■□□□□ 0.73
CCDC88B-206ENST00000473405 SLC41A1Q8IVJ1 513 aa19.62■□□□□ 0.73
CCDC88B-206ENST00000473405 CLEC4CQ8WTT0 213 aa19.62■□□□□ 0.73
CCDC88B-206ENST00000473405 RNF139Q8WU17 664 aa19.62■□□□□ 0.73
CCDC88B-206ENST00000473405 KREMEN1Q96MU8 473 aa19.62■□□□□ 0.73
CCDC88B-206ENST00000473405 SLC2A11Q9BYW1 496 aa19.62■□□□□ 0.73
CCDC88B-206ENST00000473405 MKRN2Q9H000 416 aaKnown RBP19.62■□□□□ 0.73
CCDC88B-206ENST00000473405 DMXL2Q8TDJ6 3036 aa19.61■□□□□ 0.73
CCDC88B-206ENST00000473405 GIPC1O14908 333 aa19.61■□□□□ 0.73
CCDC88B-206ENST00000473405 IGLV3-27P01718 113 aa19.61■□□□□ 0.73
CCDC88B-206ENST00000473405 ENGP17813 658 aa19.61■□□□□ 0.73
CCDC88B-206ENST00000473405 DPP6P42658 865 aa19.61■□□□□ 0.73
CCDC88B-206ENST00000473405 NOVA1P51513 510 aaKnown RBP19.61■□□□□ 0.73
CCDC88B-206ENST00000473405 ZNF33AQ06730 810 aa19.61■□□□□ 0.73
CCDC88B-206ENST00000473405 CETN1Q12798 172 aa19.61■□□□□ 0.73
CCDC88B-206ENST00000473405 KCNH2Q12809 1159 aa19.61■□□□□ 0.73
CCDC88B-206ENST00000473405 LMAN2Q12907 356 aa19.61■□□□□ 0.73
CCDC88B-206ENST00000473405 PAK1Q13153 545 aa19.61■□□□□ 0.73
CCDC88B-206ENST00000473405 ZNF234Q14588 700 aa19.61■□□□□ 0.73
CCDC88B-206ENST00000473405 EIF4HQ15056 248 aaKnown RBP19.61■□□□□ 0.73
CCDC88B-206ENST00000473405 SORCS1Q8WY21 1168 aa19.61■□□□□ 0.73
CCDC88B-206ENST00000473405 IRGQQ8WZA9 623 aa19.61■□□□□ 0.73
CCDC88B-206ENST00000473405 NUSAP1Q9BXS6 441 aaKnown RBP19.61■□□□□ 0.73
CCDC88B-206ENST00000473405 FSCN3Q9NQT6 498 aa19.61■□□□□ 0.73
CCDC88B-206ENST00000473405 ELOVL2Q9NXB9 296 aa19.61■□□□□ 0.73
CCDC88B-206ENST00000473405 CNTN6Q9UQ52 1028 aa19.61■□□□□ 0.73
CCDC88B-206ENST00000473405 DSPP15924 2871 aaKnown RBP19.61■□□□□ 0.73
CCDC88B-206ENST00000473405 ZBTB24O43167 697 aaPredicted RBP19.6■□□□□ 0.73
CCDC88B-206ENST00000473405 TSPAN3O60637 253 aa19.6■□□□□ 0.73
CCDC88B-206ENST00000473405 LATS1O95835 1130 aa19.6■□□□□ 0.73
CCDC88B-206ENST00000473405 PRKCHP24723 683 aa19.6■□□□□ 0.73
CCDC88B-206ENST00000473405 SGSHP51688 502 aa19.6■□□□□ 0.73
CCDC88B-206ENST00000473405 STARD3Q14849 445 aa19.6■□□□□ 0.73
CCDC88B-206ENST00000473405 STILQ15468 1287 aa19.6■□□□□ 0.73
CCDC88B-206ENST00000473405 MPPE1Q53F39 396 aa19.6■□□□□ 0.73
CCDC88B-206ENST00000473405 SH3PXD2AQ5TCZ1 1133 aa19.6■□□□□ 0.73
CCDC88B-206ENST00000473405 KIAA1324Q6UXG2 1013 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-206ENST00000473405 EHBP1Q8NDI1 1231 aa19.6■□□□□ 0.73
CCDC88B-206ENST00000473405 HSPA12BQ96MM6 686 aa19.6■□□□□ 0.73
CCDC88B-206ENST00000473405 CAPN10Q9HC96 672 aa19.6■□□□□ 0.73
CCDC88B-206ENST00000473405 USP36Q9P275 1121 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-206ENST00000473405 ANGPTL2Q9UKU9 493 aa19.6■□□□□ 0.73
CCDC88B-206ENST00000473405 NYNRINQ9P2P1 1898 aaKnown RBP19.59■□□□□ 0.73
CCDC88B-206ENST00000473405 GNA14O95837 355 aa19.59■□□□□ 0.73
CCDC88B-206ENST00000473405 AFPP02771 609 aaKnown RBP19.59■□□□□ 0.73
CCDC88B-206ENST00000473405 LTFP02788 710 aa19.59■□□□□ 0.73
CCDC88B-206ENST00000473405 CFIP05156 583 aa19.59■□□□□ 0.73
CCDC88B-206ENST00000473405 HLA-FP30511 346 aa19.59■□□□□ 0.73
CCDC88B-206ENST00000473405 MAPK8P45983 427 aa19.59■□□□□ 0.73
CCDC88B-206ENST00000473405 SHC2P98077 582 aa19.59■□□□□ 0.73
CCDC88B-206ENST00000473405 ADGRF1Q5T601 910 aa19.59■□□□□ 0.73
CCDC88B-206ENST00000473405 METTL3Q86U44 580 aaKnown RBP19.59■□□□□ 0.73
CCDC88B-206ENST00000473405 TRIML1Q8N9V2 468 aa19.59■□□□□ 0.73
CCDC88B-206ENST00000473405 UCMAQ8WVF2 138 aa19.59■□□□□ 0.73
CCDC88B-206ENST00000473405 HSFY1Q96LI6 401 aa19.59■□□□□ 0.73
CCDC88B-206ENST00000473405 SRRTQ9BXP5 876 aaKnown RBP19.59■□□□□ 0.73
CCDC88B-206ENST00000473405 CIPCQ9C0C6 399 aa19.59■□□□□ 0.73
CCDC88B-206ENST00000473405 INTS2Q9H0H0 1204 aaKnown RBP19.59■□□□□ 0.73
CCDC88B-206ENST00000473405 PRDM16Q9HAZ2 1276 aa19.59■□□□□ 0.73
CCDC88B-206ENST00000473405 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.59■□□□□ 0.73
CCDC88B-206ENST00000473405 ITPR1Q14643 2758 aa19.59■□□□□ 0.73
CCDC88B-206ENST00000473405 FYNP06241 537 aa19.58■□□□□ 0.72
CCDC88B-206ENST00000473405 SERPINF2P08697 491 aa19.58■□□□□ 0.72
CCDC88B-206ENST00000473405 NCAM1P13591 858 aa19.58■□□□□ 0.72
CCDC88B-206ENST00000473405 CSRP1P21291 193 aaKnown RBP19.58■□□□□ 0.72
CCDC88B-206ENST00000473405 RPL34P49207 117 aaKnown RBP19.58■□□□□ 0.72
CCDC88B-206ENST00000473405 COPAP53621 1224 aa19.58■□□□□ 0.72
CCDC88B-206ENST00000473405 ZNF445P59923 1031 aa19.58■□□□□ 0.72
CCDC88B-206ENST00000473405 DUOXA1Q1HG43 343 aa19.58■□□□□ 0.72
CCDC88B-206ENST00000473405 UAP1L1Q3KQV9 507 aa19.58■□□□□ 0.72
CCDC88B-206ENST00000473405 FAM133BQ5BKY9 247 aaKnown RBP19.58■□□□□ 0.72
CCDC88B-206ENST00000473405 CEP76Q8TAP6 659 aa19.58■□□□□ 0.72
CCDC88B-206ENST00000473405 ZNF419Q96HQ0 510 aaPredicted RBP19.58■□□□□ 0.72
CCDC88B-206ENST00000473405 PCNX2A6NKB5 2137 aa19.57■□□□□ 0.72
CCDC88B-206ENST00000473405 KCNJ18B7U540 433 aa19.57■□□□□ 0.72
CCDC88B-206ENST00000473405 FBXO21O94952 628 aa19.57■□□□□ 0.72
CCDC88B-206ENST00000473405 GPD2P43304 727 aa19.57■□□□□ 0.72
CCDC88B-206ENST00000473405 RING1Q06587 406 aa19.57■□□□□ 0.72
CCDC88B-206ENST00000473405 ZNF252P-AS1Q0IIN9 211 aa19.57■□□□□ 0.72
CCDC88B-206ENST00000473405 KIAA0907Q7Z7F0 614 aaPredicted RBP19.57■□□□□ 0.72
CCDC88B-206ENST00000473405 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.57■□□□□ 0.72
CCDC88B-206ENST00000473405 WFDC5Q8TCV5 224 aa19.57■□□□□ 0.72
CCDC88B-206ENST00000473405 ABCB8Q9NUT2 735 aa19.57■□□□□ 0.72
CCDC88B-206ENST00000473405 SLC6A14Q9UN76 642 aa19.57■□□□□ 0.72
CCDC88B-206ENST00000473405 NUMA1Q14980 2115 aa19.57■□□□□ 0.72
CCDC88B-206ENST00000473405 TIMM44O43615 452 aa19.56■□□□□ 0.72
CCDC88B-206ENST00000473405 SYNCRIPO60506 623 aaKnown RBP19.56■□□□□ 0.72
CCDC88B-206ENST00000473405 CEACAM1P13688 526 aa19.56■□□□□ 0.72
CCDC88B-206ENST00000473405 CD6P30203 668 aa19.56■□□□□ 0.72
CCDC88B-206ENST00000473405 SLC6A4P31645 630 aa19.56■□□□□ 0.72
CCDC88B-206ENST00000473405 TPMTP51580 245 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms