RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 MTERF4Q7Z6M4 381 aaKnown RBP13.29□□□□□ -0.28
VPS13D-205ENST00000473099 CCDC89Q8N998 374 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 BBOF1Q8ND07 529 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 PCDH19Q8TAB3 1148 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 ADAM32Q8TC27 787 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 ACTL9Q8TC94 416 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 GIPC2Q8TF65 315 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 HDAC7Q8WUI4 952 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 ATG4AQ8WYN0 398 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 CASP10Q92851 521 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 CSPG4P5Q96PW8 444 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 TKTL2Q9H0I9 626 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 TLR9Q9NR96 1032 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 TRPM5Q9NZQ8 1165 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 ZNF148Q9UQR1 794 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 R3HDM2Q9Y2K5 976 aaKnown RBP13.29□□□□□ -0.28
VPS13D-205ENST00000473099 HBS1LQ9Y450 684 aaKnown RBP13.29□□□□□ -0.28
VPS13D-205ENST00000473099 PCDHA11Q9Y5I1 949 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 INSL5Q9Y5Q6 135 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 RAD54BQ9Y620 910 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 CLUHO75153 1309 aa13.29□□□□□ -0.28
VPS13D-205ENST00000473099 MYO9BQ13459 2157 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 LCHNA4D1U4 455 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 EEF2KO00418 725 aaKnown RBP13.28□□□□□ -0.28
VPS13D-205ENST00000473099 ATP8B1O43520 1251 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 APOEP02649 317 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 CNPP09543 421 aaKnown RBP13.28□□□□□ -0.28
VPS13D-205ENST00000473099 CA8P35219 290 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 TBX4P57082 545 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 TPI1P60174 286 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 EIF3EP60228 445 aaKnown RBP13.28□□□□□ -0.28
VPS13D-205ENST00000473099 ADCY2Q08462 1091 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 XRCC4Q13426 336 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 OASLQ15646 514 aaKnown RBP13.28□□□□□ -0.28
VPS13D-205ENST00000473099 PABPC1LQ4VXU2 614 aaKnown RBP13.28□□□□□ -0.28
VPS13D-205ENST00000473099 C10orf120Q5SQS8 335 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 GSTA5Q7RTV2 222 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 ELMOD1Q8N336 334 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 PLD5Q8N7P1 536 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 ATP6V0D2Q8N8Y2 350 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 SPPL3Q8TCT6 385 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 GPR152Q8TDT2 470 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 AUTS2Q8WXX7 1259 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 PSMG2Q969U7 264 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 KLHL5Q96PQ7 755 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 TGS1Q96RS0 853 aaKnown RBP13.28□□□□□ -0.28
VPS13D-205ENST00000473099 TCF25Q9BQ70 676 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 FERMT1Q9BQL6 677 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 OSER1Q9NX31 292 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 DONSONQ9NYP3 566 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 CWC15Q9P013 229 aaKnown RBP13.28□□□□□ -0.28
VPS13D-205ENST00000473099 MARCH2Q9P0N8 246 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 DNPEPQ9ULA0 475 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 MAGED2Q9UNF1 606 aaPredicted RBP13.28□□□□□ -0.28
VPS13D-205ENST00000473099 DOCK6Q96HP0 2047 aa13.28□□□□□ -0.28
VPS13D-205ENST00000473099 MYO7AQ13402 2215 aa13.27□□□□□ -0.28
VPS13D-205ENST00000473099 A0A1W2PPC1 479 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 HACD1B0YJ81 288 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 DAPK3O43293 454 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 TLR5O60602 858 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 LRG1P02750 347 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 RBP3P10745 1247 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 HMGA1P17096 107 aaKnown RBP13.27□□□□□ -0.29
VPS13D-205ENST00000473099 GOT1P17174 413 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 KLRC2P26717 231 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 STIP1P31948 543 aaKnown RBP13.27□□□□□ -0.29
VPS13D-205ENST00000473099 SERPINB6P35237 376 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 ATP5C1P36542 298 aaKnown RBP13.27□□□□□ -0.29
VPS13D-205ENST00000473099 MAGEA10P43363 369 aaPredicted RBP13.27□□□□□ -0.29
VPS13D-205ENST00000473099 KCNJ1P48048 391 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 CAV1Q03135 178 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 TWF1Q12792 350 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 CALCOCO2Q13137 446 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 MTMR3Q13615 1198 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 HLTFQ14527 1009 aaKnown RBP eCLIP13.27□□□□□ -0.29
VPS13D-205ENST00000473099 LILRA6Q6PI73 481 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 ELMSAN1Q6PJG2 1045 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 RFX8Q6ZV50 586 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 ALLCQ8N6M5 410 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 PQLC3Q8N755 202 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 MRPL43Q8N983 215 aaKnown RBP13.27□□□□□ -0.29
VPS13D-205ENST00000473099 POF1BQ8WVV4 589 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 CASKIN2Q8WXE0 1202 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 SLC39A13Q96H72 371 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 C1orf74Q96LT6 269 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 ZNF512Q96ME7 567 aaPredicted RBP13.27□□□□□ -0.29
VPS13D-205ENST00000473099 TRIM51Q9BSJ1 452 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 TSPYL1Q9H0U9 437 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 PCDH9Q9HC56 1237 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 ARHGEF4Q9NR80 690 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 WHRNQ9P202 907 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 OR12D3Q9UGF7 316 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 ASIC3Q9UHC3 531 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 SFMBT1Q9UHJ3 866 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 DPP7Q9UHL4 492 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 DNMT3LQ9UJW3 386 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 SZT2Q5T011 3432 aa13.27□□□□□ -0.29
VPS13D-205ENST00000473099 C2orf71A6NGG8 1288 aa13.26□□□□□ -0.29
VPS13D-205ENST00000473099 KCNU1A8MYU2 1149 aa13.26□□□□□ -0.29
VPS13D-205ENST00000473099 NCAM2O15394 837 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms