RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 DHTKD1Q96HY7 919 aaPredicted RBP18.27■□□□□ 0.52
COL7A1-208ENST00000470076 CEP63Q96MT8 703 aa18.27■□□□□ 0.52
COL7A1-208ENST00000470076 MKRN2Q9H000 416 aaKnown RBP18.27■□□□□ 0.52
COL7A1-208ENST00000470076 CD93Q9NPY3 652 aa18.27■□□□□ 0.52
COL7A1-208ENST00000470076 CNGB3Q9NQW8 809 aa18.27■□□□□ 0.52
COL7A1-208ENST00000470076 ITM2CQ9NQX7 267 aa18.27■□□□□ 0.52
COL7A1-208ENST00000470076 USP36Q9P275 1121 aaKnown RBP18.27■□□□□ 0.52
COL7A1-208ENST00000470076 WASF3Q9UPY6 502 aa18.27■□□□□ 0.52
COL7A1-208ENST00000470076 YJEFN3A6XGL0 299 aa18.26■□□□□ 0.51
COL7A1-208ENST00000470076 E7ENQ6 273 aa18.26■□□□□ 0.51
COL7A1-208ENST00000470076 OPHN1O60890 802 aa18.26■□□□□ 0.51
COL7A1-208ENST00000470076 LATS1O95835 1130 aa18.26■□□□□ 0.51
COL7A1-208ENST00000470076 GNSP15586 552 aa18.26■□□□□ 0.51
COL7A1-208ENST00000470076 BECN1Q14457 450 aa18.26■□□□□ 0.51
COL7A1-208ENST00000470076 ZNF234Q14588 700 aa18.26■□□□□ 0.51
COL7A1-208ENST00000470076 PKDCCQ504Y2 493 aa18.26■□□□□ 0.51
COL7A1-208ENST00000470076 TMEM270Q6UE05 265 aa18.26■□□□□ 0.51
COL7A1-208ENST00000470076 LCLAT1Q6UWP7 414 aa18.26■□□□□ 0.51
COL7A1-208ENST00000470076 PIP4P1Q86T03 277 aa18.26■□□□□ 0.51
COL7A1-208ENST00000470076 MINDY1Q8N5J2 469 aa18.26■□□□□ 0.51
COL7A1-208ENST00000470076 EDEM1Q92611 657 aa18.26■□□□□ 0.51
COL7A1-208ENST00000470076 NT5C1BQ96P26 610 aa18.26■□□□□ 0.51
COL7A1-208ENST00000470076 CIPCQ9C0C6 399 aa18.26■□□□□ 0.51
COL7A1-208ENST00000470076 FSCN3Q9NQT6 498 aa18.26■□□□□ 0.51
COL7A1-208ENST00000470076 WSB2Q9NYS7 404 aaPredicted RBP18.26■□□□□ 0.51
COL7A1-208ENST00000470076 STOML2Q9UJZ1 356 aa18.26■□□□□ 0.51
COL7A1-208ENST00000470076 CLEC4EQ9ULY5 219 aa18.26■□□□□ 0.51
COL7A1-208ENST00000470076 NFE2L3Q9Y4A8 694 aa18.26■□□□□ 0.51
COL7A1-208ENST00000470076 IGF2RP11717 2491 aa18.25■□□□□ 0.51
COL7A1-208ENST00000470076 PROS1P07225 676 aa18.25■□□□□ 0.51
COL7A1-208ENST00000470076 HOXD9P28356 352 aaPredicted RBP18.25■□□□□ 0.51
COL7A1-208ENST00000470076 OXTRP30559 389 aa18.25■□□□□ 0.51
COL7A1-208ENST00000470076 DAOAP59103 153 aa18.25■□□□□ 0.51
COL7A1-208ENST00000470076 ARID5AQ03989 594 aa18.25■□□□□ 0.51
COL7A1-208ENST00000470076 CETN1Q12798 172 aa18.25■□□□□ 0.51
COL7A1-208ENST00000470076 ADGRF1Q5T601 910 aa18.25■□□□□ 0.51
COL7A1-208ENST00000470076 TMPRSS6Q8IU80 811 aa18.25■□□□□ 0.51
COL7A1-208ENST00000470076 ELOA2Q8IYF1 753 aaPredicted RBP18.25■□□□□ 0.51
COL7A1-208ENST00000470076 RBBP8NLQ8NC74 664 aaPredicted RBP18.25■□□□□ 0.51
COL7A1-208ENST00000470076 PRCCQ92733 491 aaPredicted RBP18.25■□□□□ 0.51
COL7A1-208ENST00000470076 SIPA1Q96FS4 1042 aa18.25■□□□□ 0.51
COL7A1-208ENST00000470076 TOE1Q96GM8 510 aaKnown RBP18.25■□□□□ 0.51
COL7A1-208ENST00000470076 SFMBT1Q9UHJ3 866 aa18.25■□□□□ 0.51
COL7A1-208ENST00000470076 CFAP47Q6ZTR5 3102 aa18.25■□□□□ 0.51
COL7A1-208ENST00000470076 NCAM1P13591 858 aa18.24■□□□□ 0.51
COL7A1-208ENST00000470076 LCP1P13796 627 aa18.24■□□□□ 0.51
COL7A1-208ENST00000470076 TPMTP51580 245 aa18.24■□□□□ 0.51
COL7A1-208ENST00000470076 STILQ15468 1287 aa18.24■□□□□ 0.51
COL7A1-208ENST00000470076 CNGA2Q16280 664 aa18.24■□□□□ 0.51
COL7A1-208ENST00000470076 PLEKHG6Q3KR16 790 aa18.24■□□□□ 0.51
COL7A1-208ENST00000470076 CCDC40Q4G0X9 1142 aa18.24■□□□□ 0.51
COL7A1-208ENST00000470076 TMEM215Q68D42 235 aa18.24■□□□□ 0.51
COL7A1-208ENST00000470076 MSANTD2Q6P1R3 559 aa18.24■□□□□ 0.51
COL7A1-208ENST00000470076 FOXR2Q6PJQ5 311 aa18.24■□□□□ 0.51
COL7A1-208ENST00000470076 SERPINA13PQ6UXR4 307 aa18.24■□□□□ 0.51
COL7A1-208ENST00000470076 UNQ6494/PRO21346Q6UXR6 183 aa18.24■□□□□ 0.51
COL7A1-208ENST00000470076 PPM1KQ8N3J5 372 aa18.24■□□□□ 0.51
COL7A1-208ENST00000470076 CADM4Q8NFZ8 388 aa18.24■□□□□ 0.51
COL7A1-208ENST00000470076 WFIKKN2Q8TEU8 576 aa18.24■□□□□ 0.51
COL7A1-208ENST00000470076 SLC35F5Q8WV83 523 aa18.24■□□□□ 0.51
COL7A1-208ENST00000470076 DNASE2BQ8WZ79 361 aa18.24■□□□□ 0.51
COL7A1-208ENST00000470076 IRGQQ8WZA9 623 aa18.24■□□□□ 0.51
COL7A1-208ENST00000470076 TFAP2BQ92481 460 aa18.24■□□□□ 0.51
COL7A1-208ENST00000470076 TMA16Q96EY4 203 aaKnown RBP18.24■□□□□ 0.51
COL7A1-208ENST00000470076 IRX2Q9BZI1 471 aaPredicted RBP18.24■□□□□ 0.51
COL7A1-208ENST00000470076 DNAAF2Q9NVR5 837 aaKnown RBP18.24■□□□□ 0.51
COL7A1-208ENST00000470076 PCDHB4Q9Y5E5 795 aa18.24■□□□□ 0.51
COL7A1-208ENST00000470076 AKAP13Q12802 2813 aa18.23■□□□□ 0.51
COL7A1-208ENST00000470076 MEI4A8MW99 385 aa18.23■□□□□ 0.51
COL7A1-208ENST00000470076 P4HA2O15460 535 aa18.23■□□□□ 0.51
COL7A1-208ENST00000470076 TSPAN3O60637 253 aa18.23■□□□□ 0.51
COL7A1-208ENST00000470076 IGLV3-19P01714 112 aa18.23■□□□□ 0.51
COL7A1-208ENST00000470076 EPHX1P07099 455 aa18.23■□□□□ 0.51
COL7A1-208ENST00000470076 ACADMP11310 421 aa18.23■□□□□ 0.51
COL7A1-208ENST00000470076 PRKCHP24723 683 aa18.23■□□□□ 0.51
COL7A1-208ENST00000470076 HLA-FP30511 346 aa18.23■□□□□ 0.51
COL7A1-208ENST00000470076 COPAP53621 1224 aa18.23■□□□□ 0.51
COL7A1-208ENST00000470076 SLC14A1Q13336 389 aa18.23■□□□□ 0.51
COL7A1-208ENST00000470076 ISM2Q6H9L7 571 aa18.23■□□□□ 0.51
COL7A1-208ENST00000470076 PMF1Q6P1K2 205 aa18.23■□□□□ 0.51
COL7A1-208ENST00000470076 SORCS1Q8WY21 1168 aa18.23■□□□□ 0.51
COL7A1-208ENST00000470076 GPR174Q9BXC1 333 aa18.23■□□□□ 0.51
COL7A1-208ENST00000470076 ADAM33Q9BZ11 813 aa18.23■□□□□ 0.51
COL7A1-208ENST00000470076 MAN1B1Q9UKM7 699 aa18.23■□□□□ 0.51
COL7A1-208ENST00000470076 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.23■□□□□ 0.51
COL7A1-208ENST00000470076 KCNJ18B7U540 433 aa18.22■□□□□ 0.51
COL7A1-208ENST00000470076 MSI1O43347 362 aaKnown RBP18.22■□□□□ 0.51
COL7A1-208ENST00000470076 CD44P16070 742 aaKnown RBP18.22■□□□□ 0.51
COL7A1-208ENST00000470076 RGS7P49802 495 aa18.22■□□□□ 0.51
COL7A1-208ENST00000470076 SIM1P81133 766 aaPredicted RBP18.22■□□□□ 0.51
COL7A1-208ENST00000470076 HNRNPDQ14103 355 aaKnown RBP18.22■□□□□ 0.51
COL7A1-208ENST00000470076 TTI2Q6NXR4 508 aa18.22■□□□□ 0.51
COL7A1-208ENST00000470076 UNC45BQ8IWX7 931 aa18.22■□□□□ 0.51
COL7A1-208ENST00000470076 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.22■□□□□ 0.51
COL7A1-208ENST00000470076 LMO3Q8TAP4 145 aa18.22■□□□□ 0.51
COL7A1-208ENST00000470076 GOLGA1Q92805 767 aa18.22■□□□□ 0.51
COL7A1-208ENST00000470076 HSFY1Q96LI6 401 aa18.22■□□□□ 0.51
COL7A1-208ENST00000470076 NUP58Q9BVL2 599 aa18.22■□□□□ 0.51
COL7A1-208ENST00000470076 SCNM1Q9BWG6 230 aa18.22■□□□□ 0.51
COL7A1-208ENST00000470076 ZDHHC5Q9C0B5 715 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms