RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 MMP8P22894 467 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 ASPHQ12797 758 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 ITGA9Q13797 1035 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 PIGHQ14442 188 aaPredicted RBP9.92□□□□□ -0.82
HDAC3-205ENST00000469550 ZACNQ401N2 412 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 MSS51Q4VC12 460 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 ATP13A4Q4VNC1 1196 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 C2CD6Q53TS8 623 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 ATG16L1Q676U5 607 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 POLNQ7Z5Q5 900 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 TTC7BQ86TV6 843 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 PDSS2Q86YH6 399 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 TREML1Q86YW5 311 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 RHPN2Q8IUC4 686 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 NIPA2Q8N8Q9 360 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 SIKE1Q9BRV8 207 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 WDR83Q9BRX9 315 aaKnown RBP9.92□□□□□ -0.82
HDAC3-205ENST00000469550 TMEM121Q9BTD3 319 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 RNPEPQ9H4A4 650 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 PNPLA8Q9NP80 782 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 KCNH7Q9NS40 1196 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 MKS1Q9NXB0 559 aa9.92□□□□□ -0.82
HDAC3-205ENST00000469550 REV3LO60673 3130 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 KAT6AQ92794 2004 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 ATG2AQ2TAZ0 1938 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 TCRBV5S1A1TA0A578 114 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 H3BRJ5 948 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 I3L4J1 428 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 GOLGA8RI6L899 631 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 NOP56O00567 594 aaKnown RBP9.91□□□□□ -0.82
HDAC3-205ENST00000469550 TREHO43280 583 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 ATP9BO43861 1147 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 CALB1P05937 261 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 STIP1P31948 543 aaKnown RBP9.91□□□□□ -0.82
HDAC3-205ENST00000469550 ABCD1P33897 745 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 GJC1P36383 396 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 NPTX2P47972 431 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 COL19A1Q14993 1142 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 LEXMQ3ZCV2 418 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 PLA2G4FQ68DD2 849 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 SLC39A4Q6P5W5 647 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 LCA5Q86VQ0 697 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 FBXO22Q8NEZ5 403 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 FAM172AQ8WUF8 416 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 ZNF516Q92618 1163 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 TOP1MTQ969P6 601 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 TTC17Q96AE7 1141 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 GPRASP2Q96D09 838 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 MTBPQ96DY7 904 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 SERAC1Q96JX3 654 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 FAM111AQ96PZ2 611 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 DDX50Q9BQ39 737 aaKnown RBP9.91□□□□□ -0.82
HDAC3-205ENST00000469550 PI4K2AQ9BTU6 479 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 CCDC106Q9BWC9 280 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 ADAM33Q9BZ11 813 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 S100A14Q9HCY8 104 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 IKBKGQ9Y6K9 419 aa9.91□□□□□ -0.82
HDAC3-205ENST00000469550 RNASEH1O60930 286 aaKnown RBP9.9□□□□□ -0.82
HDAC3-205ENST00000469550 BANF1O75531 89 aa9.9□□□□□ -0.82
HDAC3-205ENST00000469550 IFNB1P01574 187 aa9.9□□□□□ -0.82
HDAC3-205ENST00000469550 C4BPAP04003 597 aaKnown RBP9.9□□□□□ -0.82
HDAC3-205ENST00000469550 SERPINA6P08185 405 aa9.9□□□□□ -0.82
HDAC3-205ENST00000469550 AOC1P19801 751 aa9.9□□□□□ -0.82
HDAC3-205ENST00000469550 GNA15P30679 374 aa9.9□□□□□ -0.82
HDAC3-205ENST00000469550 RPL22P35268 128 aaKnown RBP9.9□□□□□ -0.82
HDAC3-205ENST00000469550 PSMC5P62195 406 aa9.9□□□□□ -0.82
HDAC3-205ENST00000469550 PLCB3Q01970 1234 aa9.9□□□□□ -0.82
HDAC3-205ENST00000469550 DMP1Q13316 513 aaPredicted RBP9.9□□□□□ -0.82
HDAC3-205ENST00000469550 MED21Q13503 144 aa9.9□□□□□ -0.82
HDAC3-205ENST00000469550 CUL2Q13617 745 aa9.9□□□□□ -0.82
HDAC3-205ENST00000469550 PSMD6Q15008 389 aa9.9□□□□□ -0.82
HDAC3-205ENST00000469550 TAZQ16635 292 aa9.9□□□□□ -0.82
HDAC3-205ENST00000469550 HSF5Q4G112 596 aaPredicted RBP9.9□□□□□ -0.82
HDAC3-205ENST00000469550 C1orf146Q5VVC0 180 aa9.9□□□□□ -0.82
HDAC3-205ENST00000469550 ANKRD22Q5VYY1 191 aa9.9□□□□□ -0.82
HDAC3-205ENST00000469550 ALYREFQ86V81 257 aaKnown RBP9.9□□□□□ -0.82
HDAC3-205ENST00000469550 OR6Y1Q8NGX8 325 aa9.9□□□□□ -0.82
HDAC3-205ENST00000469550 NAT14Q8WUY8 206 aa9.9□□□□□ -0.82
HDAC3-205ENST00000469550 LZICQ8WZA0 190 aa9.9□□□□□ -0.82
HDAC3-205ENST00000469550 POMGNT1Q8WZA1 660 aa9.9□□□□□ -0.82
HDAC3-205ENST00000469550 MRPL38Q96DV4 380 aaKnown RBP9.9□□□□□ -0.82
HDAC3-205ENST00000469550 KLF6Q99612 283 aaPredicted RBP9.9□□□□□ -0.82
HDAC3-205ENST00000469550 THTPAQ9BU02 230 aa9.9□□□□□ -0.82
HDAC3-205ENST00000469550 C12orf65Q9H3J6 166 aaKnown RBP9.9□□□□□ -0.82
HDAC3-205ENST00000469550 UBE2ZQ9H832 354 aaPredicted RBP9.9□□□□□ -0.82
HDAC3-205ENST00000469550 AGO4Q9HCK5 861 aaKnown RBP9.9□□□□□ -0.82
HDAC3-205ENST00000469550 ALG13Q9NP73 1137 aaKnown RBP9.9□□□□□ -0.82
HDAC3-205ENST00000469550 TBC1D22BQ9NU19 505 aa9.9□□□□□ -0.82
HDAC3-205ENST00000469550 SIRPGQ9P1W8 387 aa9.9□□□□□ -0.82
HDAC3-205ENST00000469550 ARMCX1Q9P291 453 aa9.9□□□□□ -0.82
HDAC3-205ENST00000469550 ZNF180Q9UJW8 692 aa9.9□□□□□ -0.82
HDAC3-205ENST00000469550 UBIAD1Q9Y5Z9 338 aa9.9□□□□□ -0.82
HDAC3-205ENST00000469550 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.9□□□□□ -0.83
HDAC3-205ENST00000469550 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.9□□□□□ -0.83
HDAC3-205ENST00000469550 GOLGA8SH3BPF8 625 aa9.9□□□□□ -0.83
HDAC3-205ENST00000469550 GOLGA8MH3BSY2 632 aa9.9□□□□□ -0.83
HDAC3-205ENST00000469550 DDX39AO00148 427 aaKnown RBP9.9□□□□□ -0.83
HDAC3-205ENST00000469550 COPEO14579 308 aa9.9□□□□□ -0.83
HDAC3-205ENST00000469550 PEX1O43933 1283 aa9.9□□□□□ -0.83
HDAC3-205ENST00000469550 LSM8O95777 96 aaKnown RBP9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms