RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 DBF4BQ8NFT6 615 aa4.38□□□□□ -1.71
TMEM39A-204ENST00000468545 SEPT8Q92599 483 aa4.38□□□□□ -1.71
TMEM39A-204ENST00000468545 TRIM43Q96BQ3 446 aaPredicted RBP4.38□□□□□ -1.71
TMEM39A-204ENST00000468545 BORCS6Q96GS4 357 aa4.38□□□□□ -1.71
TMEM39A-204ENST00000468545 ABHD8Q96I13 439 aa4.38□□□□□ -1.71
TMEM39A-204ENST00000468545 ZNF830Q96NB3 372 aaPredicted RBP4.38□□□□□ -1.71
TMEM39A-204ENST00000468545 TOX2Q96NM4 488 aa4.38□□□□□ -1.71
TMEM39A-204ENST00000468545 YIPF4Q9BSR8 244 aa4.38□□□□□ -1.71
TMEM39A-204ENST00000468545 LSM14BQ9BX40 385 aaKnown RBP4.38□□□□□ -1.71
TMEM39A-204ENST00000468545 IFIH1Q9BYX4 1025 aaKnown RBP4.38□□□□□ -1.71
TMEM39A-204ENST00000468545 CD244Q9BZW8 370 aa4.38□□□□□ -1.71
TMEM39A-204ENST00000468545 CXCL16Q9H2A7 254 aa4.38□□□□□ -1.71
TMEM39A-204ENST00000468545 GCM1Q9NP62 436 aa4.38□□□□□ -1.71
TMEM39A-204ENST00000468545 CHST12Q9NRB3 414 aa4.38□□□□□ -1.71
TMEM39A-204ENST00000468545 AGPAT5Q9NUQ2 364 aa4.38□□□□□ -1.71
TMEM39A-204ENST00000468545 DTLQ9NZJ0 730 aa4.38□□□□□ -1.71
TMEM39A-204ENST00000468545 CPSF3Q9UKF6 684 aaKnown RBP4.38□□□□□ -1.71
TMEM39A-204ENST00000468545 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.38□□□□□ -1.71
TMEM39A-204ENST00000468545 IPPQ9Y573 584 aa4.38□□□□□ -1.71
TMEM39A-204ENST00000468545 PCDHB2Q9Y5E7 798 aa4.38□□□□□ -1.71
TMEM39A-204ENST00000468545 STYXL1Q9Y6J8 313 aa4.38□□□□□ -1.71
TMEM39A-204ENST00000468545 SCN10AQ9Y5Y9 1956 aa4.38□□□□□ -1.71
TMEM39A-204ENST00000468545 LGALS16A8MUM7 142 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 GOLGA6L6A8MZA4 724 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 MAPK13O15264 365 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 STX10O60499 249 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 CLASP2O75122 1294 aaKnown RBP4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 CAND2O75155 1236 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 RECQL4O94761 1208 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 IL18RAPO95256 599 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 TIMP1P01033 207 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 POMCP01189 267 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 TNNC2P02585 160 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 TPM1P09493 284 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 TMEM191BP0C7N4 346 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 CSF2RAP15509 400 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 SYN1P17600 705 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 IGFBP6P24592 240 aaPredicted RBP4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 ITGB8P26012 769 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 EPHB3P54753 998 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 MYL7Q01449 175 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 CCDC173Q0VFZ6 552 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 CETN1Q12798 172 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 TRPC3Q13507 836 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 GPNMBQ14956 572 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 TMEM132DQ14C87 1099 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 PSMD6Q15008 389 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 PCBP1Q15365 356 aaKnown RBP eCLIP4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 SURF1Q15526 300 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 KYAT1Q16773 422 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 ARHGAP44Q17R89 818 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 EXOC3L4Q17RC7 722 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 TCTN1Q2MV58 587 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 CBWD6Q4V339 395 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 CBWD3Q5JTY5 395 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 GLRA4Q5JXX5 417 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 CBWD5Q5RIA9 395 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 C1orf220Q5T0J3 134 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 RNF187Q5TA31 235 aaPredicted RBP4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 KRT39Q6A163 491 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 JADE1Q6IE81 842 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 GJB7Q6PEY0 223 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 FOXR2Q6PJQ5 311 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 APTXQ7Z2E3 356 aaKnown RBP4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 CCDC186Q7Z3E2 898 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 CACNA2D4Q7Z3S7 1137 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 USP37Q86T82 979 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 ZC3H18Q86VM9 953 aaKnown RBP4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 KIF18BQ86Y91 864 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 IGDCC3Q8IVU1 814 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 VSTM4Q8IW00 320 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 BRSK2Q8IWQ3 736 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 HACE1Q8IYU2 909 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 TMEM199Q8N511 208 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 USP38Q8NB14 1042 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 NEK11Q8NG66 645 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 OR5B17Q8NGF7 314 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 PARD3BQ8TEW8 1205 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 CACTINQ8WUQ7 758 aaKnown RBP4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 RABGGTAQ92696 567 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 BADQ92934 168 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 KCNN1Q92952 543 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 SLC35C1Q96A29 364 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 PGBD4Q96DM1 585 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 TOE1Q96GM8 510 aaKnown RBP4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 ANKRD36BP1Q96IX9 119 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 SLC38A3Q99624 504 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 CGRRF1Q99675 332 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 PI4K2AQ9BTU6 479 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 BOCQ9BWV1 1114 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 SGPP1Q9BX95 441 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 TMEM117Q9H0C3 514 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 INTS2Q9H0H0 1204 aaKnown RBP4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 NXF3Q9H4D5 531 aaKnown RBP4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 NGRNQ9NPE2 291 aaKnown RBP4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 NLRC4Q9NPP4 1024 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 FAM207AQ9NSI2 230 aaPredicted RBP4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 INTS13Q9NVM9 706 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 MIOSQ9NXC5 875 aa4.37□□□□□ -1.71
TMEM39A-204ENST00000468545 B4GALT6Q9UBX8 382 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms