RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 PREBQ9HCU5 417 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 ITM2CQ9NQX7 267 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 SPHK2Q9NRA0 654 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 USP36Q9P275 1121 aaKnown RBP5.43□□□□□ -1.54
HMGB1-207ENST00000468384 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.43□□□□□ -1.54
HMGB1-207ENST00000468384 SLC4A4Q9Y6R1 1079 aa5.43□□□□□ -1.54
HMGB1-207ENST00000468384 ARID2Q68CP9 1835 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 PRAMEF33A0A0G2JMD5 474 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 A0A1W2PQ27 194 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 A0A1W2PQ64 194 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 A0A1W2PQC6 194 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 BTBD18B2RXH4 712 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 SMAD7O15105 426 aaKnown RBP5.42□□□□□ -1.54
HMGB1-207ENST00000468384 PRAMEF10O60809 474 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 ATP2C2O75185 946 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 PAGE1O75459 146 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 ITGA4P13612 1032 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 HGFP14210 728 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 TRIM27P14373 513 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 LIFP15018 202 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 EGR1P18146 543 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 NFKB1P19838 968 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 SFPQP23246 707 aaKnown RBP eCLIP5.42□□□□□ -1.54
HMGB1-207ENST00000468384 OXTRP30559 389 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 NTSR1P30989 418 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 IFNAR2P48551 515 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 FOLH1Q04609 750 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 SSRP1Q08945 709 aaKnown RBP5.42□□□□□ -1.54
HMGB1-207ENST00000468384 MTF1Q14872 753 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 CDC37Q16543 378 aaPredicted RBP5.42□□□□□ -1.54
HMGB1-207ENST00000468384 NUGGCQ68CJ6 796 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 CBLL1Q75N03 491 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 CEP97Q8IW35 865 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 SLITRK4Q8IW52 837 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 AHI1Q8N157 1196 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 FAM169BQ8N8A8 192 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 CEP120Q8N960 986 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 CPLX3Q8WVH0 158 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 ITLN2Q8WWU7 325 aaPredicted RBP5.42□□□□□ -1.54
HMGB1-207ENST00000468384 KCNB2Q92953 911 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 FEM1CQ96JP0 617 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 PNKPQ96T60 521 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 SRRTQ9BXP5 876 aaKnown RBP5.42□□□□□ -1.54
HMGB1-207ENST00000468384 GCOM2Q9BZD3 368 aaPredicted RBP5.42□□□□□ -1.54
HMGB1-207ENST00000468384 CEP44Q9C0F1 390 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 TDP1Q9NUW8 608 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 MAP3K20Q9NYL2 800 aaKnown RBP5.42□□□□□ -1.54
HMGB1-207ENST00000468384 PPT2Q9UMR5 302 aa5.42□□□□□ -1.54
HMGB1-207ENST00000468384 COL27A1Q8IZC6 1860 aaPredicted RBP5.41□□□□□ -1.54
HMGB1-207ENST00000468384 MYMKA6NI61 221 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 FANCGO15287 622 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 DUX1O43812 170 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 NMT2O60551 498 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 RAB11FIP3O75154 756 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 VAMP4O75379 141 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 FGF19O95750 216 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 F13A1P00488 732 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 PSAPP07602 524 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 MAPTP10636 758 aaKnown RBP5.41□□□□□ -1.54
HMGB1-207ENST00000468384 CD27P26842 260 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 OAS2P29728 719 aaKnown RBP5.41□□□□□ -1.54
HMGB1-207ENST00000468384 SOX18P35713 384 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 AVPR1AP37288 418 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 GRIA2P42262 883 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 RXRGP48443 463 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 TPMTP51580 245 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 CDC20Q12834 499 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 KRTAP19-4Q3LI73 84 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 SEZ6Q53EL9 994 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 PHF19Q5T6S3 580 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 TPGS2Q68CL5 300 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 EFCAB12Q6NXP0 572 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 LCNL1Q6ZST4 164 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 RAB11FIP2Q7L804 512 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 NLRX1Q86UT6 975 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 KSR1Q8IVT5 923 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 LRRC71Q8N4P6 559 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 SMG8Q8ND04 991 aaKnown RBP5.41□□□□□ -1.54
HMGB1-207ENST00000468384 FBXO27Q8NI29 283 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 ALPK1Q96QP1 1244 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 NUP58Q9BVL2 599 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 BHLHE41Q9C0J9 482 aaPredicted RBP5.41□□□□□ -1.54
HMGB1-207ENST00000468384 C6orf106Q9H6K1 298 aaPredicted RBP5.41□□□□□ -1.54
HMGB1-207ENST00000468384 KIF9Q9HAQ2 790 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 SLAMF7Q9NQ25 335 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 GDF3Q9NR23 364 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 IL17RBQ9NRM6 502 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 TLR7Q9NYK1 1049 aaKnown RBP5.41□□□□□ -1.54
HMGB1-207ENST00000468384 FOXJ2Q9P0K8 574 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 LUZP4Q9P127 313 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 YIPF1Q9Y548 306 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 PCDHGC4Q9Y5F7 938 aa5.41□□□□□ -1.54
HMGB1-207ENST00000468384 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.41□□□□□ -1.54
HMGB1-207ENST00000468384 CHD3Q12873 2000 aaKnown RBP5.41□□□□□ -1.54
HMGB1-207ENST00000468384 hCG_2014768A0A024R1R8 64 aa5.4□□□□□ -1.54
HMGB1-207ENST00000468384 A0A096LPE4 126 aa5.4□□□□□ -1.54
HMGB1-207ENST00000468384 A0A1W2PPZ6 126 aa5.4□□□□□ -1.54
HMGB1-207ENST00000468384 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.4□□□□□ -1.54
HMGB1-207ENST00000468384 TCEA3O75764 348 aa5.4□□□□□ -1.54
HMGB1-207ENST00000468384 CLSTN1O94985 981 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms