RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 ADORA2BP29275 332 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 IFNAR2P48551 515 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 KLK7P49862 253 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 CACNA2D1P54289 1103 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 USP46P62068 366 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 MTF1Q14872 753 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 SYCP1Q15431 976 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 ZNF77Q15935 545 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 ARHGAP44Q17R89 818 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 EML3Q32P44 896 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 PPP1R26Q5T8A7 1209 aaPredicted RBP12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 NUP93Q8N1F7 819 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 KIAA1958Q8N8K9 716 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 PIP4K2CQ8TBX8 421 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 SHC3Q92529 594 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 SLITRK1Q96PX8 696 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 GANQ9H2C0 597 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 PRORYQ9H606 182 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 CSNK1G1Q9HCP0 422 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 DMAP1Q9NPF5 467 aaPredicted RBP12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 RTN4Q9NQC3 1192 aaKnown RBP12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 TMEM30AQ9NV96 361 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 BCCIPQ9P287 314 aaKnown RBP eCLIP12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 KIAA1257Q9ULG3 409 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 ARHGAP26Q9UNA1 814 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 DAAM1Q9Y4D1 1078 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 FHOD1Q9Y613 1164 aa12.51□□□□□ -0.41
SQSTM1-206ENST00000466342 ZNF840PA6NDX5 716 aa12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 CAPN9O14815 690 aa12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 CBFA2T3O75081 653 aa12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 AP1G2O75843 785 aa12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 RTN3O95197 1032 aaPredicted RBP12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 CD19P15391 556 aa12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 OPRD1P41143 372 aa12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 FANCCQ00597 558 aa12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 RPL6Q02878 288 aaKnown RBP12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 ZNF33AQ06730 810 aa12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 USP4Q13107 963 aa12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 SGO2Q562F6 1265 aa12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 SLC36A4Q6YBV0 504 aa12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 DEFB119Q8N690 84 aa12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 TXNDC5Q8NBS9 432 aaKnown RBP12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 RNF214Q8ND24 703 aa12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 PDZD8Q8NEN9 1154 aa12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 SH3RF2Q8TEC5 729 aa12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 OVCA2Q8WZ82 227 aa12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 PCMTD1Q96MG8 357 aaPredicted RBP12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 NAP1L5Q96NT1 182 aaPredicted RBP12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 NAA15Q9BXJ9 866 aaKnown RBP12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 FAM207AQ9NSI2 230 aaPredicted RBP12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 COMMD8Q9NX08 183 aa12.5□□□□□ -0.41
SQSTM1-206ENST00000466342 MUC22E2RYF6 1773 aaPredicted RBP12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 CAPN8A6NHC0 703 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 O00370 1275 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 TEX33O43247 280 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 BEST1O76090 585 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 OLFM2O95897 454 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 YWHAQP27348 245 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 SLC7A9P82251 487 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 TAF10Q12962 218 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 CAMK2BQ13554 666 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 RAPGEF1Q13905 1077 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 DRAP1Q14919 205 aaPredicted RBP12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 NR1I3Q14994 352 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 STILQ15468 1287 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 GOLGA7BQ2TAP0 167 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 HSF5Q4G112 596 aaPredicted RBP12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 CLEC20AQ6ZU45 233 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 PGBD3Q8N328 593 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 GALNT15Q8N3T1 639 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 ALLCQ8N6M5 410 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 IL17RCQ8NAC3 791 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 ZMIZ2Q8NF64 920 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 NEK11Q8NG66 645 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 HMGB4Q8WW32 186 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 TFAP2BQ92481 460 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 DCBLD2Q96PD2 775 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 KCNK16Q96T55 309 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 SMOQ99835 787 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 LINC00597Q9H2U6 94 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 PNPLA8Q9NP80 782 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 IL37Q9NZH6 218 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 TSPAN16Q9UKR8 245 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 PCOLCE2Q9UKZ9 415 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 WNT6Q9Y6F9 365 aa12.49□□□□□ -0.41
SQSTM1-206ENST00000466342 A0A1W2PQC6 194 aa12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 SGK1O00141 431 aa12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 EPHB6O15197 1021 aa12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 ARHGAP6O43182 974 aa12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 KLF8O95600 359 aaPredicted RBP12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 BRD2P25440 801 aaKnown RBP12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 ITPKBP27987 946 aa12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 GNA15P30679 374 aa12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 TIE1P35590 1138 aa12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 USP8P40818 1118 aa12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 BCAT1P54687 386 aa12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 UBASH3AP57075 661 aa12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 MAP3K7CLP57077 242 aa12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 POLR2FP61218 127 aaKnown RBP12.48□□□□□ -0.41
SQSTM1-206ENST00000466342 EOGTQ5NDL2 527 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms