RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 ANP32DO95626 131 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 TOP3BO95985 862 aaKnown RBP9.23□□□□□ -0.93
SYNE1-217ENST00000466159 MYL3P08590 195 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 DLDP09622 509 aaKnown RBP9.23□□□□□ -0.93
SYNE1-217ENST00000466159 EPHB2P29323 1055 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 ARFIP2P53365 341 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 AP1B1Q10567 949 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 NME3Q13232 169 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 CCL14Q16627 93 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 PARP6Q2NL67 630 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 NBPF20Q3BBV1 942 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 LGSNQ5TDP6 509 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 KIAA0319Q5VV43 1072 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 CES4AQ5XG92 561 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 WSCD1Q658N2 575 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 HFE2Q6ZVN8 426 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 CCDC91Q7Z6B0 441 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 TP53INP2Q8IXH6 220 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 PDCD7Q8N8D1 485 aaKnown RBP9.23□□□□□ -0.93
SYNE1-217ENST00000466159 INPP5DQ92835 1189 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 HNRNPABQ99729 332 aaKnown RBP9.23□□□□□ -0.93
SYNE1-217ENST00000466159 TMEM120AQ9BXJ8 343 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 FBXO6Q9NRD1 293 aaPredicted RBP9.23□□□□□ -0.93
SYNE1-217ENST00000466159 SLC17A6Q9P2U8 582 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 PCDHA11Q9Y5I1 949 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 A0A0A0MRY4 1105 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 MEIS3P2A8K0S8 358 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 M0QYT0 321 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 PTGESO14684 152 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 KRT38O76015 456 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 ZNF865P0CJ78 1059 aaPredicted RBP9.23□□□□□ -0.93
SYNE1-217ENST00000466159 PTPN1P18031 435 aaKnown RBP9.23□□□□□ -0.93
SYNE1-217ENST00000466159 SERPINB3P29508 390 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 SMAD1Q15797 465 aaKnown RBP9.23□□□□□ -0.93
SYNE1-217ENST00000466159 SPRYD7Q5W111 196 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 TWF2Q6IBS0 349 aaKnown RBP9.23□□□□□ -0.93
SYNE1-217ENST00000466159 CASC4Q6P4E1 433 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 LONP2Q86WA8 852 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 COLGALT1Q8NBJ5 622 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 RNF169Q8NCN4 708 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 RNF139Q8WU17 664 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 DEPDC1BQ8WUY9 529 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 P2RY11Q96G91 374 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 SPATA13Q96N96 652 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 ZNF395Q9H8N7 513 aaPredicted RBP9.23□□□□□ -0.93
SYNE1-217ENST00000466159 XAB2Q9HCS7 855 aaKnown RBP9.23□□□□□ -0.93
SYNE1-217ENST00000466159 PCMTD2Q9NV79 361 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 MOCS1Q9NZB8 636 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 MCM8Q9UJA3 840 aa9.23□□□□□ -0.93
SYNE1-217ENST00000466159 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-217ENST00000466159 CCDC195A0A1B0GUA6 201 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 FAM237BA0A1B0GVD1 139 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 IQCA1LA6NCM1 817 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 HAS3O00219 553 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 TOMM70O94826 608 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 GSTA2P09210 222 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 NPR3P17342 541 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 WARSP23381 471 aaKnown RBP9.22□□□□□ -0.93
SYNE1-217ENST00000466159 CCND1P24385 295 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 MAP3K7CLP57077 242 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 SESN2P58004 480 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-217ENST00000466159 MDH1BQ5I0G3 518 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 BSPRYQ5W0U4 402 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 CLEC20AQ6ZU45 233 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 NDUFAF2Q8N183 169 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 CCNYQ8ND76 341 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 FAM13CQ8NE31 585 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 ADAM32Q8TC27 787 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 NT5C3BQ969T7 300 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 NPY6RQ99463 290 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 EBF2Q9HAK2 575 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 PIGVQ9NUD9 493 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 ARL8BQ9NVJ2 186 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 SEPT10Q9P0V9 454 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 UNCXA6NJT0 531 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 HACD1B0YJ81 288 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 RNF103O00237 685 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 NRP1O14786 923 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 DAB1O75553 588 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 TGDSO95455 350 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 RPSAP08865 295 aaKnown RBP9.22□□□□□ -0.93
SYNE1-217ENST00000466159 RARBP10826 455 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 MYL2P10916 166 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 NOS2P35228 1153 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 MAP2K2P36507 400 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 CCNFP41002 786 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 AFF1P51825 1210 aaKnown RBP9.22□□□□□ -0.93
SYNE1-217ENST00000466159 CRYBB1P53674 252 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-217ENST00000466159 SLC8A3P57103 927 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 BST1Q10588 318 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 SPDYAQ5MJ70 313 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 MORN1Q5T089 497 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 CTU1Q7Z7A3 348 aaKnown RBP9.22□□□□□ -0.93
SYNE1-217ENST00000466159 NME8Q8N427 588 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 TOP6BLQ8N6T0 577 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 MED10Q9BTT4 135 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 LRRC4Q9HBW1 653 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 SAR1AQ9NR31 198 aa9.22□□□□□ -0.93
SYNE1-217ENST00000466159 TIMM13Q9Y5L4 95 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-217ENST00000466159 SCN4AP35499 1836 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms