RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 CYTH4Q9UIA0 394 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 NOCTQ9UK39 431 aaKnown RBP18.51■□□□□ 0.55
COL7A1-205ENST00000465238 CACNA1BQ00975 2339 aa18.51■□□□□ 0.55
COL7A1-205ENST00000465238 MYO18AQ92614 2054 aaKnown RBP18.51■□□□□ 0.55
COL7A1-205ENST00000465238 ITIH6Q6UXX5 1313 aa18.5■□□□□ 0.55
COL7A1-205ENST00000465238 THADAQ6YHU6 1953 aa18.5■□□□□ 0.55
COL7A1-205ENST00000465238 A0A1W2PQJ5 194 aa18.5■□□□□ 0.55
COL7A1-205ENST00000465238 BCLAF3A2AJT9 711 aaKnown RBP18.5■□□□□ 0.55
COL7A1-205ENST00000465238 SART1O43290 800 aaKnown RBP18.5■□□□□ 0.55
COL7A1-205ENST00000465238 ALDH1A2O94788 518 aa18.5■□□□□ 0.55
COL7A1-205ENST00000465238 LSM8O95777 96 aaKnown RBP18.5■□□□□ 0.55
COL7A1-205ENST00000465238 ATP5C1P36542 298 aaKnown RBP18.5■□□□□ 0.55
COL7A1-205ENST00000465238 TNFRSF4P43489 277 aa18.5■□□□□ 0.55
COL7A1-205ENST00000465238 CREB5Q02930 508 aa18.5■□□□□ 0.55
COL7A1-205ENST00000465238 ASIC2Q16515 512 aa18.5■□□□□ 0.55
COL7A1-205ENST00000465238 PREPLQ4J6C6 727 aaPredicted RBP18.5■□□□□ 0.55
COL7A1-205ENST00000465238 C10orf120Q5SQS8 335 aa18.5■□□□□ 0.55
COL7A1-205ENST00000465238 STPG1Q5TH74 334 aa18.5■□□□□ 0.55
COL7A1-205ENST00000465238 SARM1Q6SZW1 724 aa18.5■□□□□ 0.55
COL7A1-205ENST00000465238 RSRC2Q7L4I2 434 aaKnown RBP18.5■□□□□ 0.55
COL7A1-205ENST00000465238 C12orf40Q86WS4 652 aa18.5■□□□□ 0.55
COL7A1-205ENST00000465238 ZNF276Q8N554 614 aa18.5■□□□□ 0.55
COL7A1-205ENST00000465238 ALLCQ8N6M5 410 aa18.5■□□□□ 0.55
COL7A1-205ENST00000465238 IL17RCQ8NAC3 791 aa18.5■□□□□ 0.55
COL7A1-205ENST00000465238 IPO4Q8TEX9 1081 aaKnown RBP18.5■□□□□ 0.55
COL7A1-205ENST00000465238 CNTNAP3BQ96NU0 1288 aa18.5■□□□□ 0.55
COL7A1-205ENST00000465238 CNTNAP3Q9BZ76 1288 aa18.5■□□□□ 0.55
COL7A1-205ENST00000465238 NUCKS1Q9H1E3 243 aaKnown RBP18.5■□□□□ 0.55
COL7A1-205ENST00000465238 MTPAPQ9NVV4 582 aaKnown RBP eCLIP18.5■□□□□ 0.55
COL7A1-205ENST00000465238 OSER1Q9NX31 292 aa18.5■□□□□ 0.55
COL7A1-205ENST00000465238 ANTXRLA6NF34 631 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 YJEFN3A6XGL0 299 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 E5RJQ4 531 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 E7ENQ6 273 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 TM4SF5O14894 197 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 HOXC11O43248 304 aaPredicted RBP18.49■□□□□ 0.55
COL7A1-205ENST00000465238 CHRNB2P17787 502 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 CDH5P33151 784 aaPredicted RBP18.49■□□□□ 0.55
COL7A1-205ENST00000465238 TIE1P35590 1138 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 KIR2DL1P43626 348 aaPredicted RBP18.49■□□□□ 0.55
COL7A1-205ENST00000465238 MESP2Q0VG99 397 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 EOGTQ5NDL2 527 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 BSPRYQ5W0U4 402 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 PMS2CLQ68D20 193 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 SPECC1LQ69YQ0 1117 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 TRIM72Q6ZMU5 477 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 IRF2BP2Q7Z5L9 587 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 ERICH1Q86X53 443 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 TXNDC5Q8NBS9 432 aaKnown RBP18.49■□□□□ 0.55
COL7A1-205ENST00000465238 MSANTD4Q8NCY6 345 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 MDGA1Q8NFP4 955 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 RNF139Q8WU17 664 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 AGPAT1Q99943 283 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 SMOC1Q9H4F8 434 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 POLMQ9NP87 494 aaPredicted RBP18.49■□□□□ 0.55
COL7A1-205ENST00000465238 ABCC13Q9NSE7 274 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 SEPT11Q9NVA2 429 aaKnown RBP18.49■□□□□ 0.55
COL7A1-205ENST00000465238 AIPL1Q9NZN9 384 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 NUDT5Q9UKK9 219 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 CAPN11Q9UMQ6 739 aa18.49■□□□□ 0.55
COL7A1-205ENST00000465238 LUC7L2Q9Y383 392 aaKnown RBP18.49■□□□□ 0.55
COL7A1-205ENST00000465238 KLF8O95600 359 aaPredicted RBP18.48■□□□□ 0.55
COL7A1-205ENST00000465238 TBX18O95935 607 aa18.48■□□□□ 0.55
COL7A1-205ENST00000465238 LTFP02788 710 aa18.48■□□□□ 0.55
COL7A1-205ENST00000465238 CHRM1P11229 460 aaPredicted RBP18.48■□□□□ 0.55
COL7A1-205ENST00000465238 ZBED6P86452 979 aa18.48■□□□□ 0.55
COL7A1-205ENST00000465238 FMO1Q01740 532 aa18.48■□□□□ 0.55
COL7A1-205ENST00000465238 KDSRQ06136 332 aa18.48■□□□□ 0.55
COL7A1-205ENST00000465238 KLHDC10Q6PID8 442 aa18.48■□□□□ 0.55
COL7A1-205ENST00000465238 TMEM92Q6UXU6 159 aa18.48■□□□□ 0.55
COL7A1-205ENST00000465238 NUDT18Q6ZVK8 323 aa18.48■□□□□ 0.55
COL7A1-205ENST00000465238 BHLHA9Q7RTU4 235 aa18.48■□□□□ 0.55
COL7A1-205ENST00000465238 VSTM4Q8IW00 320 aa18.48■□□□□ 0.55
COL7A1-205ENST00000465238 SFTPA1Q8IWL2 248 aa18.48■□□□□ 0.55
COL7A1-205ENST00000465238 BBS7Q8IWZ6 715 aa18.48■□□□□ 0.55
COL7A1-205ENST00000465238 ETFBKMTQ8IXQ9 262 aa18.48■□□□□ 0.55
COL7A1-205ENST00000465238 PHTF2Q8N3S3 785 aa18.48■□□□□ 0.55
COL7A1-205ENST00000465238 OLIG1Q8TAK6 271 aa18.48■□□□□ 0.55
COL7A1-205ENST00000465238 KCNV2Q8TDN2 545 aa18.48■□□□□ 0.55
COL7A1-205ENST00000465238 CLEC4CQ8WTT0 213 aa18.48■□□□□ 0.55
COL7A1-205ENST00000465238 CPXM1Q96SM3 734 aa18.48■□□□□ 0.55
COL7A1-205ENST00000465238 SPHK2Q9NRA0 654 aa18.48■□□□□ 0.55
COL7A1-205ENST00000465238 OLA1Q9NTK5 396 aaKnown RBP18.48■□□□□ 0.55
COL7A1-205ENST00000465238 DEC1Q9P2X7 70 aa18.48■□□□□ 0.55
COL7A1-205ENST00000465238 DNMT3LQ9UJW3 386 aa18.48■□□□□ 0.55
COL7A1-205ENST00000465238 INVSQ9Y283 1065 aa18.48■□□□□ 0.55
COL7A1-205ENST00000465238 SGK1O00141 431 aa18.47■□□□□ 0.55
COL7A1-205ENST00000465238 PAPSS1O43252 624 aaPredicted RBP18.47■□□□□ 0.55
COL7A1-205ENST00000465238 TPM1P09493 284 aa18.47■□□□□ 0.55
COL7A1-205ENST00000465238 IRF1P10914 325 aa18.47■□□□□ 0.55
COL7A1-205ENST00000465238 TNFAIP3P21580 790 aa18.47■□□□□ 0.55
COL7A1-205ENST00000465238 NOMO3P69849 1222 aa18.47■□□□□ 0.55
COL7A1-205ENST00000465238 TRIM14Q14142 442 aa18.47■□□□□ 0.55
COL7A1-205ENST00000465238 EMC10Q5UCC4 262 aa18.47■□□□□ 0.55
COL7A1-205ENST00000465238 NAA35Q5VZE5 725 aa18.47■□□□□ 0.55
COL7A1-205ENST00000465238 RNF43Q68DV7 783 aa18.47■□□□□ 0.55
COL7A1-205ENST00000465238 OR6B2Q6IFH4 312 aa18.47■□□□□ 0.55
COL7A1-205ENST00000465238 TCEAL6Q6IPX3 200 aa18.47■□□□□ 0.55
COL7A1-205ENST00000465238 HTR3DQ70Z44 454 aa18.47■□□□□ 0.55
COL7A1-205ENST00000465238 CPA5Q8WXQ8 436 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms