RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 TSPAN3O60637 253 aa16.07■□□□□ 0.16
SKA3-204ENST00000462482 LATS1O95835 1130 aa16.07■□□□□ 0.16
SKA3-204ENST00000462482 VDRP11473 427 aa16.07■□□□□ 0.16
SKA3-204ENST00000462482 CD59P13987 128 aa16.07■□□□□ 0.16
SKA3-204ENST00000462482 ADIGQ0VDE8 80 aa16.07■□□□□ 0.16
SKA3-204ENST00000462482 GRIK2Q13002 908 aa16.07■□□□□ 0.16
SKA3-204ENST00000462482 PNOCQ13519 176 aa16.07■□□□□ 0.16
SKA3-204ENST00000462482 STIM1Q13586 685 aa16.07■□□□□ 0.16
SKA3-204ENST00000462482 ENPP2Q13822 863 aa16.07■□□□□ 0.16
SKA3-204ENST00000462482 TRIP6Q15654 476 aaKnown RBP16.07■□□□□ 0.16
SKA3-204ENST00000462482 FNDC3BQ53EP0 1204 aaKnown RBP16.07■□□□□ 0.16
SKA3-204ENST00000462482 ZNF658Q5TYW1 1059 aaPredicted RBP16.07■□□□□ 0.16
SKA3-204ENST00000462482 DCAF12L1Q5VU92 463 aa16.07■□□□□ 0.16
SKA3-204ENST00000462482 BSPRYQ5W0U4 402 aa16.07■□□□□ 0.16
SKA3-204ENST00000462482 IL27RAQ6UWB1 636 aa16.07■□□□□ 0.16
SKA3-204ENST00000462482 ZCCHC9Q8N567 271 aaKnown RBP16.07■□□□□ 0.16
SKA3-204ENST00000462482 DNASE2BQ8WZ79 361 aa16.07■□□□□ 0.16
SKA3-204ENST00000462482 GATA6Q92908 595 aa16.07■□□□□ 0.16
SKA3-204ENST00000462482 GSDMAQ96QA5 445 aa16.07■□□□□ 0.16
SKA3-204ENST00000462482 CD93Q9NPY3 652 aa16.07■□□□□ 0.16
SKA3-204ENST00000462482 METTL12A8MUP2 240 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 BCAT2O15382 392 aaPredicted RBP16.06■□□□□ 0.16
SKA3-204ENST00000462482 CER1O95813 267 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 ATP5BP06576 529 aaKnown RBP16.06■□□□□ 0.16
SKA3-204ENST00000462482 PRCPP42785 496 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 LRRC63Q05C16 580 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 CETN1Q12798 172 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 LRMPQ12912 555 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 CBWD6Q4V339 395 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 CBWD3Q5JTY5 395 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 CBWD5Q5RIA9 395 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 ADGRF1Q5T601 910 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 CACUL1Q86Y37 369 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 NAXDQ8IW45 347 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 CCDC117Q8IWD4 279 aaPredicted RBP16.06■□□□□ 0.16
SKA3-204ENST00000462482 FAM217AQ8IXS0 508 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 ZNF557Q8N988 423 aaPredicted RBP16.06■□□□□ 0.16
SKA3-204ENST00000462482 OR2T3Q8NH03 318 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 UBA3Q8TBC4 463 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 SNX19Q92543 992 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 EDEM1Q92611 657 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 SMARCE1Q969G3 411 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 PCED1AQ9H1Q7 454 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 LHX5Q9H2C1 402 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 FBRSQ9HAH7 460 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 METTL14Q9HCE5 456 aaKnown RBP16.06■□□□□ 0.16
SKA3-204ENST00000462482 CNGB3Q9NQW8 809 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 KLK13Q9UKR3 277 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 APOBEC2Q9Y235 224 aaKnown RBP16.06■□□□□ 0.16
SKA3-204ENST00000462482 COQ4Q9Y3A0 265 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 USP24Q9UPU5 2620 aa16.06■□□□□ 0.16
SKA3-204ENST00000462482 TYW5A2RUC4 315 aaKnown RBP16.05■□□□□ 0.16
SKA3-204ENST00000462482 LCP1P13796 627 aa16.05■□□□□ 0.16
SKA3-204ENST00000462482 PRKCHP24723 683 aa16.05■□□□□ 0.16
SKA3-204ENST00000462482 MATKP42679 507 aa16.05■□□□□ 0.16
SKA3-204ENST00000462482 SLC11A2P49281 568 aa16.05■□□□□ 0.16
SKA3-204ENST00000462482 STILQ15468 1287 aa16.05■□□□□ 0.16
SKA3-204ENST00000462482 COBLL1Q53SF7 1204 aa16.05■□□□□ 0.16
SKA3-204ENST00000462482 CHST9Q7L1S5 443 aa16.05■□□□□ 0.16
SKA3-204ENST00000462482 FAM124AQ86V42 546 aa16.05■□□□□ 0.16
SKA3-204ENST00000462482 UNC45BQ8IWX7 931 aa16.05■□□□□ 0.16
SKA3-204ENST00000462482 AHI1Q8N157 1196 aa16.05■□□□□ 0.16
SKA3-204ENST00000462482 CHCHD4Q8N4Q1 142 aa16.05■□□□□ 0.16
SKA3-204ENST00000462482 SETD7Q8WTS6 366 aaKnown RBP16.05■□□□□ 0.16
SKA3-204ENST00000462482 SORCS1Q8WY21 1168 aa16.05■□□□□ 0.16
SKA3-204ENST00000462482 KCTD13Q8WZ19 329 aa16.05■□□□□ 0.16
SKA3-204ENST00000462482 NDRG1Q92597 394 aaKnown RBP16.05■□□□□ 0.16
SKA3-204ENST00000462482 TMEM121BQ9BXQ6 578 aaPredicted RBP16.05■□□□□ 0.16
SKA3-204ENST00000462482 GDPD2Q9HCC8 539 aa16.05■□□□□ 0.16
SKA3-204ENST00000462482 SFMBT1Q9UHJ3 866 aa16.05■□□□□ 0.16
SKA3-204ENST00000462482 CLEC4EQ9ULY5 219 aa16.05■□□□□ 0.16
SKA3-204ENST00000462482 YJEFN3A6XGL0 299 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 KCNJ18B7U540 433 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 E7ENQ6 273 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 TULP2O00295 520 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 O00370 1275 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 PSMA7O14818 248 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 IGLV3-19P01714 112 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 DNTTP04053 509 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 PAEPP09466 180 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 HLA-EP13747 358 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 HOXD9P28356 352 aaPredicted RBP16.04■□□□□ 0.16
SKA3-204ENST00000462482 COPAP53621 1224 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 FAM193AP78312 1265 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 TEAD4Q15561 434 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 CCDC40Q4G0X9 1142 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 NUGGCQ68CJ6 796 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 ANKRD40Q6AI12 368 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 TMEM270Q6UE05 265 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 SCML4Q8N228 414 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 IRGQQ8WZA9 623 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 P2RY11Q96G91 374 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 NT5C1BQ96P26 610 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 DDX50Q9BQ39 737 aaKnown RBP16.04■□□□□ 0.16
SKA3-204ENST00000462482 IRX2Q9BZI1 471 aaPredicted RBP16.04■□□□□ 0.16
SKA3-204ENST00000462482 GAREM1Q9H706 876 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 ABCB8Q9NUT2 735 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 EIF2B4Q9UI10 523 aaKnown RBP16.04■□□□□ 0.16
SKA3-204ENST00000462482 GGA2Q9UJY4 613 aa16.04■□□□□ 0.16
SKA3-204ENST00000462482 PCDHB4Q9Y5E5 795 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms