RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 METTL3Q86U44 580 aaKnown RBP23.77■■□□□ 1.4
PTPN4-207ENST00000460162 ERLEC1Q96DZ1 483 aa23.77■■□□□ 1.4
PTPN4-207ENST00000460162 ELOVL2Q9NXB9 296 aa23.77■■□□□ 1.4
PTPN4-207ENST00000460162 MAP1BP46821 2468 aaKnown RBP23.77■■□□□ 1.4
PTPN4-207ENST00000460162 CACNA1BQ00975 2339 aa23.77■■□□□ 1.4
PTPN4-207ENST00000460162 MSI1O43347 362 aaKnown RBP23.76■■□□□ 1.39
PTPN4-207ENST00000460162 CFIP05156 583 aa23.76■■□□□ 1.39
PTPN4-207ENST00000460162 ENGP17813 658 aa23.76■■□□□ 1.39
PTPN4-207ENST00000460162 PMF1Q6P1K2 205 aa23.76■■□□□ 1.39
PTPN4-207ENST00000460162 HSFY1Q96LI6 401 aa23.76■■□□□ 1.39
PTPN4-207ENST00000460162 HSPA12BQ96MM6 686 aa23.76■■□□□ 1.39
PTPN4-207ENST00000460162 ZSWIM1Q9BR11 485 aa23.76■■□□□ 1.39
PTPN4-207ENST00000460162 SLC6A17Q9H1V8 727 aa23.76■■□□□ 1.39
PTPN4-207ENST00000460162 CLEC4EQ9ULY5 219 aa23.76■■□□□ 1.39
PTPN4-207ENST00000460162 SLC6A14Q9UN76 642 aa23.76■■□□□ 1.39
PTPN4-207ENST00000460162 ASCC3Q8N3C0 2202 aaKnown RBP23.75■■□□□ 1.39
PTPN4-207ENST00000460162 RNF225M0QZC1 329 aaPredicted RBP23.75■■□□□ 1.39
PTPN4-207ENST00000460162 BIN1O00499 593 aa23.75■■□□□ 1.39
PTPN4-207ENST00000460162 FBXO21O94952 628 aa23.75■■□□□ 1.39
PTPN4-207ENST00000460162 AFPP02771 609 aaKnown RBP23.75■■□□□ 1.39
PTPN4-207ENST00000460162 SERPINF2P08697 491 aa23.75■■□□□ 1.39
PTPN4-207ENST00000460162 RGS7P49802 495 aa23.75■■□□□ 1.39
PTPN4-207ENST00000460162 KCNH2Q12809 1159 aa23.75■■□□□ 1.39
PTPN4-207ENST00000460162 ZNF234Q14588 700 aa23.75■■□□□ 1.39
PTPN4-207ENST00000460162 ADGRF1Q5T601 910 aa23.75■■□□□ 1.39
PTPN4-207ENST00000460162 SH3PXD2AQ5TCZ1 1133 aa23.75■■□□□ 1.39
PTPN4-207ENST00000460162 SLC41A1Q8IVJ1 513 aa23.75■■□□□ 1.39
PTPN4-207ENST00000460162 ARHGEF19Q8IW93 802 aa23.75■■□□□ 1.39
PTPN4-207ENST00000460162 TRIML1Q8N9V2 468 aa23.75■■□□□ 1.39
PTPN4-207ENST00000460162 WFIKKN2Q8TEU8 576 aa23.75■■□□□ 1.39
PTPN4-207ENST00000460162 GOLGA1Q92805 767 aa23.75■■□□□ 1.39
PTPN4-207ENST00000460162 IRX2Q9BZI1 471 aaPredicted RBP23.75■■□□□ 1.39
PTPN4-207ENST00000460162 CIPCQ9C0C6 399 aa23.75■■□□□ 1.39
PTPN4-207ENST00000460162 PRDM16Q9HAZ2 1276 aa23.75■■□□□ 1.39
PTPN4-207ENST00000460162 CD93Q9NPY3 652 aa23.75■■□□□ 1.39
PTPN4-207ENST00000460162 USP36Q9P275 1121 aaKnown RBP23.75■■□□□ 1.39
PTPN4-207ENST00000460162 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.75■■□□□ 1.39
PTPN4-207ENST00000460162 CEP295Q9C0D2 2601 aa23.75■■□□□ 1.39
PTPN4-207ENST00000460162 TIMM44O43615 452 aa23.74■■□□□ 1.39
PTPN4-207ENST00000460162 SYNCRIPO60506 623 aaKnown RBP23.74■■□□□ 1.39
PTPN4-207ENST00000460162 GADD45BO75293 160 aaPredicted RBP23.74■■□□□ 1.39
PTPN4-207ENST00000460162 NDUFS2O75306 463 aa23.74■■□□□ 1.39
PTPN4-207ENST00000460162 GABBR2O75899 941 aa23.74■■□□□ 1.39
PTPN4-207ENST00000460162 IGLV3-27P01718 113 aa23.74■■□□□ 1.39
PTPN4-207ENST00000460162 LTFP02788 710 aa23.74■■□□□ 1.39
PTPN4-207ENST00000460162 CEACAM1P13688 526 aa23.74■■□□□ 1.39
PTPN4-207ENST00000460162 MAPK8P45983 427 aa23.74■■□□□ 1.39
PTPN4-207ENST00000460162 ZNF252P-AS1Q0IIN9 211 aa23.74■■□□□ 1.39
PTPN4-207ENST00000460162 NUGGCQ68CJ6 796 aa23.74■■□□□ 1.39
PTPN4-207ENST00000460162 RRAGAQ7L523 313 aa23.74■■□□□ 1.39
PTPN4-207ENST00000460162 DEFB119Q8N690 84 aa23.74■■□□□ 1.39
PTPN4-207ENST00000460162 EHBP1Q8NDI1 1231 aa23.74■■□□□ 1.39
PTPN4-207ENST00000460162 MKRN2Q9H000 416 aaKnown RBP23.74■■□□□ 1.39
PTPN4-207ENST00000460162 CAPN10Q9HC96 672 aa23.74■■□□□ 1.39
PTPN4-207ENST00000460162 ADAMTS9Q9P2N4 1935 aa23.74■■□□□ 1.39
PTPN4-207ENST00000460162 CD6P30203 668 aa23.73■■□□□ 1.39
PTPN4-207ENST00000460162 ATXN3P54252 364 aaPredicted RBP23.73■■□□□ 1.39
PTPN4-207ENST00000460162 STX17P56962 302 aa23.73■■□□□ 1.39
PTPN4-207ENST00000460162 ARID5AQ03989 594 aa23.73■■□□□ 1.39
PTPN4-207ENST00000460162 GFPT1Q06210 699 aaPredicted RBP23.73■■□□□ 1.39
PTPN4-207ENST00000460162 RING1Q06587 406 aa23.73■■□□□ 1.39
PTPN4-207ENST00000460162 MEA1Q16626 185 aa23.73■■□□□ 1.39
PTPN4-207ENST00000460162 UAP1L1Q3KQV9 507 aa23.73■■□□□ 1.39
PTPN4-207ENST00000460162 TMEM215Q68D42 235 aa23.73■■□□□ 1.39
PTPN4-207ENST00000460162 SERPINA13PQ6UXR4 307 aa23.73■■□□□ 1.39
PTPN4-207ENST00000460162 DDX51Q8N8A6 666 aaKnown RBP eCLIP23.73■■□□□ 1.39
PTPN4-207ENST00000460162 FOXJ1Q92949 421 aa23.73■■□□□ 1.39
PTPN4-207ENST00000460162 ZNF419Q96HQ0 510 aaPredicted RBP23.73■■□□□ 1.39
PTPN4-207ENST00000460162 INTS2Q9H0H0 1204 aaKnown RBP23.73■■□□□ 1.39
PTPN4-207ENST00000460162 SUSD2Q9UGT4 822 aa23.73■■□□□ 1.39
PTPN4-207ENST00000460162 CNTN6Q9UQ52 1028 aa23.73■■□□□ 1.39
PTPN4-207ENST00000460162 CACNA1EQ15878 2313 aa23.72■■□□□ 1.39
PTPN4-207ENST00000460162 PIK3R2O00459 728 aa23.72■■□□□ 1.39
PTPN4-207ENST00000460162 SART1O43290 800 aaKnown RBP23.72■■□□□ 1.39
PTPN4-207ENST00000460162 TSPAN3O60637 253 aa23.72■■□□□ 1.39
PTPN4-207ENST00000460162 FGFR1OPO95684 399 aaKnown RBP23.72■■□□□ 1.39
PTPN4-207ENST00000460162 NCAM1P13591 858 aa23.72■■□□□ 1.39
PTPN4-207ENST00000460162 PRKCHP24723 683 aa23.72■■□□□ 1.39
PTPN4-207ENST00000460162 HLA-FP30511 346 aa23.72■■□□□ 1.39
PTPN4-207ENST00000460162 MPP7Q5T2T1 576 aa23.72■■□□□ 1.39
PTPN4-207ENST00000460162 SYCP2LQ5T4T6 812 aa23.72■■□□□ 1.39
PTPN4-207ENST00000460162 UNC45BQ8IWX7 931 aa23.72■■□□□ 1.39
PTPN4-207ENST00000460162 ZNF557Q8N988 423 aaPredicted RBP23.72■■□□□ 1.39
PTPN4-207ENST00000460162 TMA16Q96EY4 203 aaKnown RBP23.72■■□□□ 1.39
PTPN4-207ENST00000460162 KREMEN1Q96MU8 473 aa23.72■■□□□ 1.39
PTPN4-207ENST00000460162 SRRTQ9BXP5 876 aaKnown RBP23.72■■□□□ 1.39
PTPN4-207ENST00000460162 GIPC1O14908 333 aa23.71■■□□□ 1.39
PTPN4-207ENST00000460162 IRAK2O43187 625 aa23.71■■□□□ 1.39
PTPN4-207ENST00000460162 RPL34P49207 117 aaKnown RBP23.71■■□□□ 1.39
PTPN4-207ENST00000460162 SLC11A2P49281 568 aa23.71■■□□□ 1.39
PTPN4-207ENST00000460162 COPAP53621 1224 aa23.71■■□□□ 1.39
PTPN4-207ENST00000460162 WDR45BQ5MNZ6 344 aa23.71■■□□□ 1.39
PTPN4-207ENST00000460162 TMPRSS6Q8IU80 811 aa23.71■■□□□ 1.39
PTPN4-207ENST00000460162 AHI1Q8N157 1196 aa23.71■■□□□ 1.39
PTPN4-207ENST00000460162 CLEC4CQ8WTT0 213 aa23.71■■□□□ 1.39
PTPN4-207ENST00000460162 SORCS1Q8WY21 1168 aa23.71■■□□□ 1.39
PTPN4-207ENST00000460162 PRCCQ92733 491 aaPredicted RBP23.71■■□□□ 1.39
PTPN4-207ENST00000460162 SIPA1Q96FS4 1042 aa23.71■■□□□ 1.39
PTPN4-207ENST00000460162 ITM2CQ9NQX7 267 aa23.71■■□□□ 1.39
PTPN4-207ENST00000460162 WSB2Q9NYS7 404 aaPredicted RBP23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms