RNA–Protein interactions for RNA: ENST00000438773.2

TRAPPC9-202, Transcript of trafficking protein particle complex 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAPPC9, Length 4,297 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC9-202ENST00000438773 SDR42E2A6NKP2 422 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 CCT8L1PA6NM43 557 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 MTA2O94776 668 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 LUC7L3O95232 432 aaKnown RBP11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 RNF219Q5W0B1 726 aaPredicted RBP11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 FAM161BQ96MY7 647 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 PWWP2AQ96N64 755 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 DDX50Q9BQ39 737 aaKnown RBP11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 PIDD1Q9HB75 910 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 HMGXB4Q9UGU5 601 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 STXBP5LQ9Y2K9 1186 aa11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 DDX60LQ5H9U9 1706 aaKnown RBP11.92□□□□□ -0.5
TRAPPC9-202ENST00000438773 UBA6A0AVT1 1052 aaPredicted RBP11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 DNAJC3Q13217 504 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 XRCC4Q13426 336 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 FAM187BQ17R55 369 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 TRPM8Q7Z2W7 1104 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 ARMC2Q8NEN0 867 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 TTC8Q8TAM2 541 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 ATP6V1E2Q96A05 226 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 GRAMD1AQ96CP6 724 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 PAFAH2Q99487 392 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 DUSP16Q9BY84 665 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 TRPV6Q9H1D0 765 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 PIH1D1Q9NWS0 290 aaKnown RBP11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 LSM7Q9UK45 103 aaKnown RBP11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 DRG1Q9Y295 367 aaKnown RBP11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 RREB1Q92766 1687 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 DNAJC25-GNG10A0A024R161 153 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 E2F8A0AVK6 867 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 ARFIP2P53365 341 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 OVGP1Q12889 678 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 DPYSL3Q14195 570 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 ISLR2Q6UXK2 745 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 FAM35AQ86V20 835 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 PRCCQ92733 491 aaPredicted RBP11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 PTPRN2Q92932 1015 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 MYLPFQ96A32 169 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 YME1L1Q96TA2 773 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 MUC3BQ9H195 1237 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 RNF39Q9H2S5 420 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 ADAM7Q9H2U9 754 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 SLC8A2Q9UPR5 921 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 ANXA9O76027 345 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 RPL22P35268 128 aaKnown RBP11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 MATKP42679 507 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 NR2C2P49116 596 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 SLC11A2P49281 568 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 KCNJ2P63252 427 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 POU5F1Q01860 360 aaKnown RBP11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 GRIK3Q13003 919 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 TFAP2DQ7Z6R9 452 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 RASAL3Q86YV0 1011 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 ZCCHC9Q8N567 271 aaKnown RBP11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 ZNF317Q96PQ6 595 aaPredicted RBP11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 TWNKQ96RR1 684 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 SHCBP1LQ9BZQ2 653 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 PDLIM7Q9NR12 457 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 XPO1O14980 1071 aaKnown RBP11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 SPRP35270 261 aaPredicted RBP11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 KDSRQ06136 332 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 FASTKD1Q53R41 847 aaKnown RBP11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 NECAB2Q7Z6G3 386 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 FNIP1Q8TF40 1166 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 LRRN4Q8WUT4 740 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 TLCD1Q96CP7 247 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 DPEP3Q9H4B8 488 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 ZFP69BQ9UJL9 534 aa11.91□□□□□ -0.5
TRAPPC9-202ENST00000438773 GOLGA4Q13439 2230 aaKnown RBP11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 A8MUI8 341 aa11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 RNF103O00237 685 aa11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 NCAM2O15394 837 aa11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 CREB1P16220 341 aa11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 YWHAQP27348 245 aa11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 RANBP1P43487 201 aa11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 CLCNKBP51801 687 aa11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 TMED1Q13445 227 aa11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 USP10Q14694 798 aaKnown RBP11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 ALLCQ8N6M5 410 aa11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 PPP1R36Q96LQ0 422 aa11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 TSPAN18Q96SJ8 248 aa11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 NAT9Q9BTE0 207 aa11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 NFKBIZQ9BYH8 718 aa11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 NRDE2Q9H7Z3 1164 aa11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 NPHS2Q9NP85 383 aa11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 URODP06132 367 aa11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 LMO2P25791 158 aa11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 MRPS5P82675 430 aaKnown RBP11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 TAF5Q15542 800 aa11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 UGP2Q16851 508 aa11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 TTC39BQ5VTQ0 682 aaPredicted RBP11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 TTC27Q6P3X3 843 aa11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 CEP70Q8NHQ1 597 aa11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 ATXN2LQ8WWM7 1075 aaKnown RBP11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 NDRG1Q92597 394 aaKnown RBP11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 SARS2Q9NP81 518 aaKnown RBP11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 IRAK4Q9NWZ3 460 aa11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 TRPM5Q9NZQ8 1165 aa11.9□□□□□ -0.5
TRAPPC9-202ENST00000438773 OR12D3Q9UGF7 316 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms