RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 CAPN11Q9UMQ6 739 aa19.39■□□□□ 0.69
SHH-203ENST00000435425 LUC7L2Q9Y383 392 aaKnown RBP19.39■□□□□ 0.69
SHH-203ENST00000435425 CACNA1IQ9P0X4 2223 aa19.39■□□□□ 0.69
SHH-203ENST00000435425 CACNG3O60359 315 aa19.38■□□□□ 0.69
SHH-203ENST00000435425 LATS1O95835 1130 aa19.38■□□□□ 0.69
SHH-203ENST00000435425 IGLV3-25P01717 112 aa19.38■□□□□ 0.69
SHH-203ENST00000435425 TFE3P19532 575 aaPredicted RBP19.38■□□□□ 0.69
SHH-203ENST00000435425 SLC6A4P31645 630 aa19.38■□□□□ 0.69
SHH-203ENST00000435425 FLT3P36888 993 aa19.38■□□□□ 0.69
SHH-203ENST00000435425 SCNN1AP37088 669 aa19.38■□□□□ 0.69
SHH-203ENST00000435425 GRIA2P42262 883 aa19.38■□□□□ 0.69
SHH-203ENST00000435425 CXCL12P48061 93 aa19.38■□□□□ 0.69
SHH-203ENST00000435425 DGKGP49619 791 aa19.38■□□□□ 0.69
SHH-203ENST00000435425 PTP4A2Q12974 167 aa19.38■□□□□ 0.69
SHH-203ENST00000435425 EMC10Q5UCC4 262 aa19.38■□□□□ 0.69
SHH-203ENST00000435425 NADSYN1Q6IA69 706 aa19.38■□□□□ 0.69
SHH-203ENST00000435425 ACAD10Q6JQN1 1059 aa19.38■□□□□ 0.69
SHH-203ENST00000435425 ZNF571Q7Z3V5 609 aaPredicted RBP19.38■□□□□ 0.69
SHH-203ENST00000435425 PHF13Q86YI8 300 aaPredicted RBP19.38■□□□□ 0.69
SHH-203ENST00000435425 FAM217AQ8IXS0 508 aa19.38■□□□□ 0.69
SHH-203ENST00000435425 MAML2Q8IZL2 1156 aaPredicted RBP19.38■□□□□ 0.69
SHH-203ENST00000435425 PHTF2Q8N3S3 785 aa19.38■□□□□ 0.69
SHH-203ENST00000435425 SPEM1Q8N4L4 309 aa19.38■□□□□ 0.69
SHH-203ENST00000435425 EMC1Q8N766 993 aa19.38■□□□□ 0.69
SHH-203ENST00000435425 TMA16Q96EY4 203 aaKnown RBP19.38■□□□□ 0.69
SHH-203ENST00000435425 RBSNQ9H1K0 784 aa19.38■□□□□ 0.69
SHH-203ENST00000435425 POLR3BQ9NW08 1133 aaPredicted RBP19.38■□□□□ 0.69
SHH-203ENST00000435425 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.38■□□□□ 0.69
SHH-203ENST00000435425 C2orf42Q9NWW7 574 aa19.38■□□□□ 0.69
SHH-203ENST00000435425 TAS2R14Q9NYV8 317 aa19.38■□□□□ 0.69
SHH-203ENST00000435425 STAP1Q9ULZ2 295 aa19.38■□□□□ 0.69
SHH-203ENST00000435425 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.38■□□□□ 0.69
SHH-203ENST00000435425 ITIH6Q6UXX5 1313 aa19.37■□□□□ 0.69
SHH-203ENST00000435425 PENKP01210 267 aaPredicted RBP19.37■□□□□ 0.69
SHH-203ENST00000435425 GYPCP04921 128 aa19.37■□□□□ 0.69
SHH-203ENST00000435425 CALB1P05937 261 aa19.37■□□□□ 0.69
SHH-203ENST00000435425 CASP14P31944 242 aa19.37■□□□□ 0.69
SHH-203ENST00000435425 TIE1P35590 1138 aa19.37■□□□□ 0.69
SHH-203ENST00000435425 PRKCIP41743 596 aa19.37■□□□□ 0.69
SHH-203ENST00000435425 CCR3P51677 355 aa19.37■□□□□ 0.69
SHH-203ENST00000435425 SGSHP51688 502 aa19.37■□□□□ 0.69
SHH-203ENST00000435425 ZBED6P86452 979 aa19.37■□□□□ 0.69
SHH-203ENST00000435425 PREPLQ4J6C6 727 aaPredicted RBP19.37■□□□□ 0.69
SHH-203ENST00000435425 TDRD12Q587J7 1177 aaKnown RBP19.37■□□□□ 0.69
SHH-203ENST00000435425 FAM133BQ5BKY9 247 aaKnown RBP19.37■□□□□ 0.69
SHH-203ENST00000435425 C10orf76Q5T2E6 689 aa19.37■□□□□ 0.69
SHH-203ENST00000435425 ATP6V0D2Q8N8Y2 350 aa19.37■□□□□ 0.69
SHH-203ENST00000435425 TBCBQ99426 244 aa19.37■□□□□ 0.69
SHH-203ENST00000435425 NPY6RQ99463 290 aa19.37■□□□□ 0.69
SHH-203ENST00000435425 DDX50Q9BQ39 737 aaKnown RBP19.37■□□□□ 0.69
SHH-203ENST00000435425 SYT11Q9BT88 431 aa19.37■□□□□ 0.69
SHH-203ENST00000435425 IER2Q9BTL4 223 aa19.37■□□□□ 0.69
SHH-203ENST00000435425 SELENOOQ9BVL4 669 aa19.37■□□□□ 0.69
SHH-203ENST00000435425 NUCKS1Q9H1E3 243 aaKnown RBP19.37■□□□□ 0.69
SHH-203ENST00000435425 ZDHHC4Q9NPG8 344 aa19.37■□□□□ 0.69
SHH-203ENST00000435425 CALCOCO1Q9P1Z2 691 aa19.37■□□□□ 0.69
SHH-203ENST00000435425 STIM2Q9P246 746 aa19.37■□□□□ 0.69
SHH-203ENST00000435425 SLC12A6Q9UHW9 1150 aa19.37■□□□□ 0.69
SHH-203ENST00000435425 STOML2Q9UJZ1 356 aa19.37■□□□□ 0.69
SHH-203ENST00000435425 TMEM59LQ9UK28 342 aa19.37■□□□□ 0.69
SHH-203ENST00000435425 CLEC4EQ9ULY5 219 aa19.37■□□□□ 0.69
SHH-203ENST00000435425 TBL1XO60907 577 aa19.36■□□□□ 0.69
SHH-203ENST00000435425 ATG13O75143 517 aa19.36■□□□□ 0.69
SHH-203ENST00000435425 SP9P0CG40 484 aa19.36■□□□□ 0.69
SHH-203ENST00000435425 ABCB4P21439 1286 aa19.36■□□□□ 0.69
SHH-203ENST00000435425 CCR1P32246 355 aa19.36■□□□□ 0.69
SHH-203ENST00000435425 DEUP1Q05D60 604 aa19.36■□□□□ 0.69
SHH-203ENST00000435425 EIF4EBP2Q13542 120 aaPredicted RBP19.36■□□□□ 0.69
SHH-203ENST00000435425 PIK3R6Q5UE93 754 aa19.36■□□□□ 0.69
SHH-203ENST00000435425 OTUD1Q5VV17 481 aaPredicted RBP19.36■□□□□ 0.69
SHH-203ENST00000435425 RAP1GAP2Q684P5 730 aa19.36■□□□□ 0.69
SHH-203ENST00000435425 TRNP1Q6NT89 227 aa19.36■□□□□ 0.69
SHH-203ENST00000435425 NUDT18Q6ZVK8 323 aa19.36■□□□□ 0.69
SHH-203ENST00000435425 MON1BQ7L1V2 547 aa19.36■□□□□ 0.69
SHH-203ENST00000435425 CHSY1Q86X52 802 aa19.36■□□□□ 0.69
SHH-203ENST00000435425 DNAAF5Q86Y56 855 aa19.36■□□□□ 0.69
SHH-203ENST00000435425 CCDC33Q8N5R6 958 aa19.36■□□□□ 0.69
SHH-203ENST00000435425 TERB1Q8NA31 727 aa19.36■□□□□ 0.69
SHH-203ENST00000435425 JOSD2Q8TAC2 188 aa19.36■□□□□ 0.69
SHH-203ENST00000435425 OLIG1Q8TAK6 271 aa19.36■□□□□ 0.69
SHH-203ENST00000435425 AZIN2Q96A70 460 aa19.36■□□□□ 0.69
SHH-203ENST00000435425 IQCDQ96DY2 449 aa19.36■□□□□ 0.69
SHH-203ENST00000435425 CFAP57Q96MR6 1250 aa19.36■□□□□ 0.69
SHH-203ENST00000435425 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19.36■□□□□ 0.69
SHH-203ENST00000435425 ADAM33Q9BZ11 813 aa19.36■□□□□ 0.69
SHH-203ENST00000435425 RRN3Q9NYV6 651 aa19.36■□□□□ 0.69
SHH-203ENST00000435425 AP5Z1O43299 807 aa19.35■□□□□ 0.69
SHH-203ENST00000435425 CISD3P0C7P0 127 aa19.35■□□□□ 0.69
SHH-203ENST00000435425 SLC2A3P11169 496 aa19.35■□□□□ 0.69
SHH-203ENST00000435425 KRT3P12035 628 aa19.35■□□□□ 0.69
SHH-203ENST00000435425 HOXC13P31276 330 aa19.35■□□□□ 0.69
SHH-203ENST00000435425 TNFRSF4P43489 277 aa19.35■□□□□ 0.69
SHH-203ENST00000435425 ATXN1P54253 815 aaKnown RBP19.35■□□□□ 0.69
SHH-203ENST00000435425 ATP11AP98196 1134 aa19.35■□□□□ 0.69
SHH-203ENST00000435425 C1QBPQ07021 282 aaKnown RBP19.35■□□□□ 0.69
SHH-203ENST00000435425 PPP2R5DQ14738 602 aa19.35■□□□□ 0.69
SHH-203ENST00000435425 SLC25A52Q3SY17 297 aa19.35■□□□□ 0.69
SHH-203ENST00000435425 SPECC1LQ69YQ0 1117 aa19.35■□□□□ 0.69
SHH-203ENST00000435425 SND1Q7KZF4 910 aaKnown RBP eCLIP19.35■□□□□ 0.69
SHH-203ENST00000435425 MCOLN2Q8IZK6 566 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms