RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 TRIM6Q9C030 488 aaPredicted RBP12.18□□□□□ -0.46
CD44-209ENST00000433892 WWP1Q9H0M0 922 aa12.18□□□□□ -0.46
CD44-209ENST00000433892 NMRK1Q9NWW6 199 aa12.18□□□□□ -0.46
CD44-209ENST00000433892 GJD2Q9UKL4 321 aa12.18□□□□□ -0.46
CD44-209ENST00000433892 KCNH4Q9UQ05 1017 aa12.18□□□□□ -0.46
CD44-209ENST00000433892 HBS1LQ9Y450 684 aaKnown RBP12.18□□□□□ -0.46
CD44-209ENST00000433892 NVLO15381 856 aaKnown RBP12.18□□□□□ -0.46
CD44-209ENST00000433892 TBX10O75333 385 aa12.18□□□□□ -0.46
CD44-209ENST00000433892 PSMG1O95456 288 aa12.18□□□□□ -0.46
CD44-209ENST00000433892 SERPINB9P50453 376 aa12.18□□□□□ -0.46
CD44-209ENST00000433892 ERFP50548 548 aa12.18□□□□□ -0.46
CD44-209ENST00000433892 SESN2P58004 480 aaPredicted RBP12.18□□□□□ -0.46
CD44-209ENST00000433892 BST2Q10589 180 aaKnown RBP12.18□□□□□ -0.46
CD44-209ENST00000433892 STX3Q13277 289 aa12.18□□□□□ -0.46
CD44-209ENST00000433892 THOC5Q13769 683 aaKnown RBP12.18□□□□□ -0.46
CD44-209ENST00000433892 TSNAXIP1Q2TAA8 658 aa12.18□□□□□ -0.46
CD44-209ENST00000433892 ZNF618Q5T7W0 954 aa12.18□□□□□ -0.46
CD44-209ENST00000433892 SNX30Q5VWJ9 437 aa12.18□□□□□ -0.46
CD44-209ENST00000433892 FAM91A1Q658Y4 838 aa12.18□□□□□ -0.46
CD44-209ENST00000433892 RBM15BQ8NDT2 890 aaKnown RBP12.18□□□□□ -0.46
CD44-209ENST00000433892 STMN2Q93045 179 aa12.18□□□□□ -0.46
CD44-209ENST00000433892 SNX27Q96L92 541 aa12.18□□□□□ -0.46
CD44-209ENST00000433892 EBF4Q9BQW3 602 aa12.18□□□□□ -0.46
CD44-209ENST00000433892 APOL6Q9BWW8 343 aa12.18□□□□□ -0.46
CD44-209ENST00000433892 FAM49AQ9H0Q0 323 aaPredicted RBP12.18□□□□□ -0.46
CD44-209ENST00000433892 MMADHCQ9H3L0 296 aaPredicted RBP12.18□□□□□ -0.46
CD44-209ENST00000433892 ADARB2Q9NS39 739 aaKnown RBP12.18□□□□□ -0.46
CD44-209ENST00000433892 ZSWIM8A7E2V4 1837 aa12.18□□□□□ -0.46
CD44-209ENST00000433892 AKAP5P24588 427 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 VHLP40337 213 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 SARNPP82979 210 aaKnown RBP12.17□□□□□ -0.46
CD44-209ENST00000433892 PPIL2Q13356 520 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 ZBTB6Q15916 424 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 DCAF4L1Q3SXM0 396 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 C9orf57Q5W0N0 161 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 ARHGAP17Q68EM7 881 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 CAPRIN2Q6IMN6 1127 aaKnown RBP12.17□□□□□ -0.46
CD44-209ENST00000433892 TMPRSS6Q8IU80 811 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 ANKRD52Q8NB46 1076 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 COLGALT1Q8NBJ5 622 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 BEST2Q8NFU1 509 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 PPP1R14CQ8TAE6 165 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 FAM161BQ96MY7 647 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 PLEKHA5Q9HAU0 1116 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 CDHR5Q9HBB8 845 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 TMPRSS4Q9NRS4 437 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 IL1RAPL1Q9NZN1 696 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 COL1A2P08123 1366 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 SYNJ2BP-COX16A0A087WUM0 186 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 A0A0A0MRY4 1105 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 DCAF8L1A6NGE4 600 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 LIN7AO14910 233 aaPredicted RBP12.17□□□□□ -0.46
CD44-209ENST00000433892 BIRC5O15392 142 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 LYPLA1O75608 230 aaPredicted RBP12.17□□□□□ -0.46
CD44-209ENST00000433892 DGKIO75912 1065 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 NEBLO76041 1014 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 GSRP00390 522 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 ALDOAP04075 364 aaKnown RBP12.17□□□□□ -0.46
CD44-209ENST00000433892 ACADSP16219 412 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 GNL1P36915 607 aaPredicted RBP12.17□□□□□ -0.46
CD44-209ENST00000433892 BCAT1P54687 386 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 SLC34A1Q06495 639 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 AP1B1Q10567 949 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 UBAP2LQ14157 1087 aaKnown RBP12.17□□□□□ -0.46
CD44-209ENST00000433892 FASTKD1Q53R41 847 aaKnown RBP12.17□□□□□ -0.46
CD44-209ENST00000433892 TIFABQ6ZNK6 161 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 FASTKD5Q7L8L6 764 aaKnown RBP12.17□□□□□ -0.46
CD44-209ENST00000433892 CATSPER4Q7RTX7 472 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 UNC93AQ86WB7 457 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 LRRC52Q8N7C0 313 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 SLC2A14Q8TDB8 520 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 KBTBD7Q8WVZ9 684 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 SCG3Q8WXD2 468 aaKnown RBP12.17□□□□□ -0.46
CD44-209ENST00000433892 ZNF333Q96JL9 665 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 CLPTM1LQ96KA5 538 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 SPATA13Q96N96 652 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 GCOM2Q9BZD3 368 aaPredicted RBP12.17□□□□□ -0.46
CD44-209ENST00000433892 NXF3Q9H4D5 531 aaKnown RBP12.17□□□□□ -0.46
CD44-209ENST00000433892 SETD4Q9NVD3 440 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 THAP1Q9NVV9 213 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.17□□□□□ -0.46
CD44-209ENST00000433892 COX16Q9P0S2 106 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 SEPT10Q9P0V9 454 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 PSAT1Q9Y617 370 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 USP3Q9Y6I4 520 aa12.17□□□□□ -0.46
CD44-209ENST00000433892 PLXNA1Q9UIW2 1896 aa12.16□□□□□ -0.46
CD44-209ENST00000433892 BPTFQ12830 3046 aa12.16□□□□□ -0.46
CD44-209ENST00000433892 SDR42E2A6NKP2 422 aa12.16□□□□□ -0.46
CD44-209ENST00000433892 PRR5-ARHGAP8B1AHC4 643 aa12.16□□□□□ -0.46
CD44-209ENST00000433892 TPP1O14773 563 aa12.16□□□□□ -0.46
CD44-209ENST00000433892 SPTLC1O15269 473 aa12.16□□□□□ -0.46
CD44-209ENST00000433892 ITM2AO43736 263 aa12.16□□□□□ -0.46
CD44-209ENST00000433892 MFSD11O43934 449 aa12.16□□□□□ -0.46
CD44-209ENST00000433892 TOMM70O94826 608 aa12.16□□□□□ -0.46
CD44-209ENST00000433892 KCNA4P22459 653 aa12.16□□□□□ -0.46
CD44-209ENST00000433892 MGAT1P26572 445 aa12.16□□□□□ -0.46
CD44-209ENST00000433892 ARL4AP40617 200 aa12.16□□□□□ -0.46
CD44-209ENST00000433892 RPL10AP62906 217 aaKnown RBP12.16□□□□□ -0.46
CD44-209ENST00000433892 ARHGAP8P85298 464 aa12.16□□□□□ -0.46
CD44-209ENST00000433892 ZNF792Q3KQV3 632 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms