RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 KTI12Q96EK9 354 aaPredicted RBP6.65□□□□□ -1.34
USP54-206ENST00000433394 WDYHV1Q96HA8 205 aa6.65□□□□□ -1.34
USP54-206ENST00000433394 HS6ST2Q96MM7 605 aa6.65□□□□□ -1.34
USP54-206ENST00000433394 PDCL3Q9H2J4 239 aa6.65□□□□□ -1.34
USP54-206ENST00000433394 DKK3Q9UBP4 350 aa6.65□□□□□ -1.34
USP54-206ENST00000433394 PCDHB2Q9Y5E7 798 aa6.65□□□□□ -1.34
USP54-206ENST00000433394 PCDHA10Q9Y5I2 948 aa6.65□□□□□ -1.34
USP54-206ENST00000433394 LOC105369274A0A096LPK9 316 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 LOC102723532A0A0G2JNH3 316 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 GCOM1H8Y6P7 765 aaPredicted RBP6.64□□□□□ -1.35
USP54-206ENST00000433394 CA12O43570 354 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 TJP3O95049 919 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 ERBB2P04626 1255 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 FAM163BP0C2L3 166 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 ZNF20P17024 532 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 DUSP1P28562 367 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 PNPLA4P41247 253 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 LIFRP42702 1097 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 JAK3P52333 1124 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 RCAN1P53805 252 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 EEFSECP57772 596 aaKnown RBP6.64□□□□□ -1.35
USP54-206ENST00000433394 MPP3Q13368 585 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 CYP1B1Q16678 543 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 FAM187BQ17R55 369 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 SPATS1Q496A3 300 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 GRHL2Q6ISB3 625 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 ANO7Q6IWH7 933 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 CLEC4GQ6UXB4 293 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 OR4N4Q8N0Y3 316 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 SLC44A3Q8N4M1 653 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 PTGR2Q8N8N7 351 aaPredicted RBP6.64□□□□□ -1.35
USP54-206ENST00000433394 SLC2A12Q8TD20 617 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 CACTINQ8WUQ7 758 aaKnown RBP6.64□□□□□ -1.35
USP54-206ENST00000433394 SLC9A6Q92581 669 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 NPIPB3Q92617 1050 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 STAMQ92783 540 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 RFKQ969G6 155 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 SH3KBP1Q96B97 665 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 PDE11AQ9HCR9 933 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 PREBQ9HCU5 417 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 TMEM160Q9NX00 188 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 VPS4AQ9UN37 437 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 ADAMTS5Q9UNA0 930 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 GDAQ9Y2T3 454 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 LAS1LQ9Y4W2 734 aaKnown RBP6.64□□□□□ -1.35
USP54-206ENST00000433394 AFG3L2Q9Y4W6 797 aa6.64□□□□□ -1.35
USP54-206ENST00000433394 CCDC187A0A096LP49 1063 aa6.63□□□□□ -1.35
USP54-206ENST00000433394 VWA3AA6NCI4 1184 aa6.63□□□□□ -1.35
USP54-206ENST00000433394 KLK10O43240 276 aa6.63□□□□□ -1.35
USP54-206ENST00000433394 CCNT1O60563 726 aaKnown RBP6.63□□□□□ -1.35
USP54-206ENST00000433394 WEE2P0C1S8 567 aa6.63□□□□□ -1.35
USP54-206ENST00000433394 MAKP20794 623 aa6.63□□□□□ -1.35
USP54-206ENST00000433394 ZFP36P26651 326 aaKnown RBP6.63□□□□□ -1.35
USP54-206ENST00000433394 CTGFP29279 349 aa6.63□□□□□ -1.35
USP54-206ENST00000433394 CXCR5P32302 372 aa6.63□□□□□ -1.35
USP54-206ENST00000433394 MCM5P33992 734 aa6.63□□□□□ -1.35
USP54-206ENST00000433394 PAFAH1B1P43034 410 aa6.63□□□□□ -1.35
USP54-206ENST00000433394 RPL15P61313 204 aaKnown RBP6.63□□□□□ -1.35
USP54-206ENST00000433394 SIM2Q14190 667 aaPredicted RBP6.63□□□□□ -1.35
USP54-206ENST00000433394 RUNDC3AQ59EK9 446 aa6.63□□□□□ -1.35
USP54-206ENST00000433394 PCID2Q5JVF3 399 aa6.63□□□□□ -1.35
USP54-206ENST00000433394 C12orf76Q8N812 135 aaPredicted RBP6.63□□□□□ -1.35
USP54-206ENST00000433394 ACTRT2Q8TDY3 377 aa6.63□□□□□ -1.35
USP54-206ENST00000433394 ST8SIA4Q92187 359 aa6.63□□□□□ -1.35
USP54-206ENST00000433394 MCRS1Q96EZ8 462 aa6.63□□□□□ -1.35
USP54-206ENST00000433394 COQ10AQ96MF6 247 aa6.63□□□□□ -1.35
USP54-206ENST00000433394 PPP1R10Q96QC0 940 aaKnown RBP6.63□□□□□ -1.35
USP54-206ENST00000433394 C1QTNF3Q9BXJ4 246 aa6.63□□□□□ -1.35
USP54-206ENST00000433394 RNF26Q9BY78 433 aaPredicted RBP6.63□□□□□ -1.35
USP54-206ENST00000433394 ABHD16BQ9H3Z7 469 aa6.63□□□□□ -1.35
USP54-206ENST00000433394 SYNPO2LQ9H987 977 aa6.63□□□□□ -1.35
USP54-206ENST00000433394 PLEKHA2Q9HB19 425 aa6.63□□□□□ -1.35
USP54-206ENST00000433394 SLC2A4RGQ9NR83 387 aa6.63□□□□□ -1.35
USP54-206ENST00000433394 DUSP22Q9NRW4 184 aa6.63□□□□□ -1.35
USP54-206ENST00000433394 CNOT7Q9UIV1 285 aaKnown RBP6.63□□□□□ -1.35
USP54-206ENST00000433394 WDR27A2RRH5 827 aa6.62□□□□□ -1.35
USP54-206ENST00000433394 FAM90A20PA6NIJ5 464 aa6.62□□□□□ -1.35
USP54-206ENST00000433394 AGAP5A6NIR3 686 aa6.62□□□□□ -1.35
USP54-206ENST00000433394 PEX12O00623 359 aa6.62□□□□□ -1.35
USP54-206ENST00000433394 TSPAN4O14817 238 aa6.62□□□□□ -1.35
USP54-206ENST00000433394 BAIAP3O94812 1187 aa6.62□□□□□ -1.35
USP54-206ENST00000433394 C1RP00736 705 aa6.62□□□□□ -1.35
USP54-206ENST00000433394 HNRNPA1P09651 372 aaKnown RBP eCLIP6.62□□□□□ -1.35
USP54-206ENST00000433394 PRKCHP24723 683 aa6.62□□□□□ -1.35
USP54-206ENST00000433394 SLC8A1P32418 973 aa6.62□□□□□ -1.35
USP54-206ENST00000433394 GRIA3P42263 894 aa6.62□□□□□ -1.35
USP54-206ENST00000433394 CCR5P51681 352 aa6.62□□□□□ -1.35
USP54-206ENST00000433394 CLNS1AP54105 237 aaKnown RBP6.62□□□□□ -1.35
USP54-206ENST00000433394 LSM12Q3MHD2 195 aaKnown RBP6.62□□□□□ -1.35
USP54-206ENST00000433394 GLE1Q53GS7 698 aaKnown RBP6.62□□□□□ -1.35
USP54-206ENST00000433394 AARS2Q5JTZ9 985 aaKnown RBP6.62□□□□□ -1.35
USP54-206ENST00000433394 ZNF484Q5JVG2 852 aa6.62□□□□□ -1.35
USP54-206ENST00000433394 WDR45BQ5MNZ6 344 aa6.62□□□□□ -1.35
USP54-206ENST00000433394 LIPMQ5VYY2 423 aa6.62□□□□□ -1.35
USP54-206ENST00000433394 FAM180BQ6P0A1 224 aa6.62□□□□□ -1.35
USP54-206ENST00000433394 DENND1BQ6P3S1 775 aa6.62□□□□□ -1.35
USP54-206ENST00000433394 UCMAQ8WVF2 138 aa6.62□□□□□ -1.35
USP54-206ENST00000433394 CTHRC1Q96CG8 243 aa6.62□□□□□ -1.35
USP54-206ENST00000433394 RRP36Q96EU6 259 aaKnown RBP6.62□□□□□ -1.35
USP54-206ENST00000433394 ADGRE3Q9BY15 652 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms