RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 ZC3H12AQ5D1E8 599 aaKnown RBP12.92□□□□□ -0.34
USP40-205ENST00000430158 SH3PXD2AQ5TCZ1 1133 aa12.92□□□□□ -0.34
USP40-205ENST00000430158 RNF43Q68DV7 783 aa12.92□□□□□ -0.34
USP40-205ENST00000430158 DNAJC24Q6P3W2 148 aa12.92□□□□□ -0.34
USP40-205ENST00000430158 RAD9BQ6WBX8 426 aa12.92□□□□□ -0.34
USP40-205ENST00000430158 TRIM67Q6ZTA4 783 aa12.92□□□□□ -0.34
USP40-205ENST00000430158 DENND1CQ8IV53 801 aa12.92□□□□□ -0.34
USP40-205ENST00000430158 YAF2Q8IY57 180 aa12.92□□□□□ -0.34
USP40-205ENST00000430158 ARFGAP1Q8N6T3 406 aa12.92□□□□□ -0.34
USP40-205ENST00000430158 CCDC42Q96M95 316 aa12.92□□□□□ -0.34
USP40-205ENST00000430158 DCLK3Q9C098 648 aa12.92□□□□□ -0.34
USP40-205ENST00000430158 ECT2Q9H8V3 914 aa12.92□□□□□ -0.34
USP40-205ENST00000430158 C11orf16Q9NQ32 467 aa12.92□□□□□ -0.34
USP40-205ENST00000430158 CNOT8Q9UFF9 292 aaKnown RBP12.92□□□□□ -0.34
USP40-205ENST00000430158 XPO7Q9UIA9 1087 aaKnown RBP12.92□□□□□ -0.34
USP40-205ENST00000430158 SH3BP1Q9Y3L3 701 aa12.92□□□□□ -0.34
USP40-205ENST00000430158 KIAA1549LQ6ZVL6 1849 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 SOWAHDA6NJG2 315 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 M0QYT0 321 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 AKR1B10O60218 316 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 ALADP13716 330 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 SOX9P48436 509 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 IFNAR2P48551 515 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 HDAC4P56524 1084 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 STARD6P59095 220 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 PFKPQ01813 784 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 PPP2R5DQ14738 602 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 DHCR24Q15392 516 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 C15orf59Q2T9L4 293 aaPredicted RBP12.91□□□□□ -0.34
USP40-205ENST00000430158 ITPRIPL2Q3MIP1 535 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 NUGGCQ68CJ6 796 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 CC2D1AQ6P1N0 951 aaPredicted RBP12.91□□□□□ -0.34
USP40-205ENST00000430158 TXNDC11Q6PKC3 985 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 TMEM25Q86YD3 366 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 TMTC1Q8IUR5 882 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 CCDC170Q8IYT3 715 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 CPXM2Q8N436 756 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 FNIP1Q8TF40 1166 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 ATP2A3Q93084 1043 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 ZNF653Q96CK0 615 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 MYEOVQ96EZ4 313 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 TRIM11Q96F44 468 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 MCEEQ96PE7 176 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 PRMT1Q99873 361 aaKnown RBP12.91□□□□□ -0.34
USP40-205ENST00000430158 SELENOOQ9BVL4 669 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 HEBP1Q9NRV9 189 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 PARVAQ9NVD7 372 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 DDIT4Q9NX09 232 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 ARHGEF38Q9NXL2 777 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 MARK1Q9P0L2 795 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 ZNF510Q9Y2H8 683 aa12.91□□□□□ -0.34
USP40-205ENST00000430158 REXO2Q9Y3B8 237 aaKnown RBP12.91□□□□□ -0.34
USP40-205ENST00000430158 GOLGA6L7A0A1B0GV03 622 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 EIF3CLB5ME19 914 aaKnown RBP12.9□□□□□ -0.34
USP40-205ENST00000430158 HOXC11O43248 304 aaPredicted RBP12.9□□□□□ -0.34
USP40-205ENST00000430158 ACSL4O60488 711 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 F9P00740 461 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 PENKP01210 267 aaPredicted RBP12.9□□□□□ -0.34
USP40-205ENST00000430158 GLULP15104 373 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 ABCB4P21439 1286 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 GPD1P21695 349 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 SLC6A4P31645 630 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 CTHP32929 405 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 GJA4P35212 333 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 OPRD1P41143 372 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 SULT1E1P49888 294 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 FZD5Q13467 585 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 TCEAL1Q15170 157 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 LY6G5CQ5SRR4 150 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 ADGRF1Q5T601 910 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 NAIF1Q69YI7 327 aaPredicted RBP12.9□□□□□ -0.34
USP40-205ENST00000430158 STRADAQ7RTN6 431 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 UNC45BQ8IWX7 931 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 ETFBKMTQ8IXQ9 262 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 ZNF683Q8IZ20 524 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 TTC16Q8NEE8 873 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 PDLIM2Q96JY6 352 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 EIF3CQ99613 913 aaKnown RBP12.9□□□□□ -0.34
USP40-205ENST00000430158 CNPY3Q9BT09 278 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 FAM204AQ9H8W3 233 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 SPHK2Q9NRA0 654 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.9□□□□□ -0.34
USP40-205ENST00000430158 LSM7Q9UK45 103 aaKnown RBP12.9□□□□□ -0.34
USP40-205ENST00000430158 FBXO10Q9UK96 956 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 STAP1Q9ULZ2 295 aa12.9□□□□□ -0.34
USP40-205ENST00000430158 EPN1Q9Y6I3 576 aaPredicted RBP12.9□□□□□ -0.34
USP40-205ENST00000430158 CHD5Q8TDI0 1954 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 CCP110O43303 1012 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 NFATC1O95644 943 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 PDGFBP01127 241 aaPredicted RBP12.89□□□□□ -0.35
USP40-205ENST00000430158 H2AFZP0C0S5 128 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 TMEM253P0C7T8 217 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 SDC4P31431 198 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 GBP1P32455 592 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 RDXP35241 583 aaKnown RBP12.89□□□□□ -0.35
USP40-205ENST00000430158 HARS2P49590 506 aaKnown RBP12.89□□□□□ -0.35
USP40-205ENST00000430158 GSDMDP57764 484 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 ATP11AP98196 1134 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 PRKCQQ04759 706 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 MESP2Q0VG99 397 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms