RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 SH3GL2Q99962 352 aa10.98□□□□□ -0.65
TCOF1-204ENST00000427724 OSBPL8Q9BZF1 889 aa10.98□□□□□ -0.65
TCOF1-204ENST00000427724 CDC42EP4Q9H3Q1 356 aaKnown RBP10.98□□□□□ -0.65
TCOF1-204ENST00000427724 TLR9Q9NR96 1032 aa10.98□□□□□ -0.65
TCOF1-204ENST00000427724 CASZ1Q86V15 1759 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 SERPIND1P05546 499 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 PSEN1P49768 467 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 THOP1P52888 689 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 CSE1LP55060 971 aaKnown RBP10.97□□□□□ -0.65
TCOF1-204ENST00000427724 EIF3EP60228 445 aaKnown RBP10.97□□□□□ -0.65
TCOF1-204ENST00000427724 TIGD5Q53EQ6 642 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 KCNT1Q5JUK3 1230 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 ARHGEF19Q8IW93 802 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 B3GALNT2Q8NCR0 500 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 FAM172AQ8WUF8 416 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 ERP27Q96DN0 273 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 NAF1Q96HR8 494 aaKnown RBP10.97□□□□□ -0.65
TCOF1-204ENST00000427724 EGFL8Q99944 293 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 NIFKQ9BYG3 293 aaKnown RBP10.97□□□□□ -0.65
TCOF1-204ENST00000427724 OLA1Q9NTK5 396 aaKnown RBP10.97□□□□□ -0.65
TCOF1-204ENST00000427724 DEC1Q9P2X7 70 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 VANGL2Q9ULK5 521 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 FAF1Q9UNN5 650 aaPredicted RBP10.97□□□□□ -0.65
TCOF1-204ENST00000427724 ASTN1O14525 1302 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 CFAP99D6REC4 459 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 M0R2N6 131 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 LTFP02788 710 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 ZNF865P0CJ78 1059 aaPredicted RBP10.97□□□□□ -0.65
TCOF1-204ENST00000427724 PYGMP11217 842 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 CYP2F1P24903 491 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 RFC2P35250 354 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 PRKCIP41743 596 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 ARL4CP56559 192 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 ROR1Q01973 937 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 VARS2Q5ST30 1063 aaKnown RBP10.97□□□□□ -0.65
TCOF1-204ENST00000427724 DSG4Q86SJ6 1040 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 DENND1CQ8IV53 801 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 CDKL3Q8IVW4 592 aaPredicted RBP10.97□□□□□ -0.65
TCOF1-204ENST00000427724 MREGQ8N565 214 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 CEP70Q8NHQ1 597 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 AGAP11Q8TF27 550 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 ZNF606Q8WXB4 792 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 DNAJC9Q8WXX5 260 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.97□□□□□ -0.65
TCOF1-204ENST00000427724 VAV3Q9UKW4 847 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 FIS1Q9Y3D6 152 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 C2CD2Q9Y426 696 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 BAZ2AQ9UIF9 1905 aaKnown RBP10.97□□□□□ -0.65
TCOF1-204ENST00000427724 GYG2O15488 501 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 KCNN4O15554 427 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 GMNNO75496 209 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 RARGP13631 454 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 CYP11B1P15538 503 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 RRM1P23921 792 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 MARCKSL1P49006 195 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 PIGHQ14442 188 aaPredicted RBP10.97□□□□□ -0.65
TCOF1-204ENST00000427724 SYTL3Q4VX76 610 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 MFSD5Q6N075 450 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 FRA10AC1Q70Z53 315 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 YTHDF3Q7Z739 585 aaKnown RBP10.97□□□□□ -0.65
TCOF1-204ENST00000427724 NUP93Q8N1F7 819 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 RXFP2Q8WXD0 754 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 MAML1Q92585 1016 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 SERPINB11Q96P15 392 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 TRABDQ9H4I3 376 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 STN1Q9H668 368 aaKnown RBP10.97□□□□□ -0.65
TCOF1-204ENST00000427724 LATS2Q9NRM7 1088 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 ETAA1Q9NY74 926 aa10.97□□□□□ -0.65
TCOF1-204ENST00000427724 SHOX2O60902 331 aaPredicted RBP10.96□□□□□ -0.65
TCOF1-204ENST00000427724 LCA5LO95447 670 aa10.96□□□□□ -0.65
TCOF1-204ENST00000427724 IL1BP01584 269 aa10.96□□□□□ -0.65
TCOF1-204ENST00000427724 ESRRAP11474 423 aaPredicted RBP10.96□□□□□ -0.65
TCOF1-204ENST00000427724 TAF10Q12962 218 aa10.96□□□□□ -0.65
TCOF1-204ENST00000427724 DYNC1I2Q13409 638 aaKnown RBP10.96□□□□□ -0.65
TCOF1-204ENST00000427724 CBX2Q14781 532 aaPredicted RBP10.96□□□□□ -0.65
TCOF1-204ENST00000427724 DEFB106AQ8N104 65 aa10.96□□□□□ -0.65
TCOF1-204ENST00000427724 HIPK4Q8NE63 616 aa10.96□□□□□ -0.65
TCOF1-204ENST00000427724 DDX56Q9NY93 547 aaKnown RBP10.96□□□□□ -0.65
TCOF1-204ENST00000427724 FLRT1Q9NZU1 646 aa10.96□□□□□ -0.65
TCOF1-204ENST00000427724 STRCP1A6NGW2 1772 aa10.96□□□□□ -0.65
TCOF1-204ENST00000427724 STX7O15400 261 aaKnown RBP10.96□□□□□ -0.65
TCOF1-204ENST00000427724 DCTN3O75935 186 aa10.96□□□□□ -0.65
TCOF1-204ENST00000427724 GJA1P17302 382 aa10.96□□□□□ -0.65
TCOF1-204ENST00000427724 COPS2P61201 443 aa10.96□□□□□ -0.65
TCOF1-204ENST00000427724 MRPS35P82673 323 aaKnown RBP10.96□□□□□ -0.65
TCOF1-204ENST00000427724 GTF2BQ00403 316 aa10.96□□□□□ -0.65
TCOF1-204ENST00000427724 BOLA3Q53S33 107 aa10.96□□□□□ -0.65
TCOF1-204ENST00000427724 NXNQ6DKJ4 435 aa10.96□□□□□ -0.65
TCOF1-204ENST00000427724 FBXL19Q6PCT2 694 aa10.96□□□□□ -0.65
TCOF1-204ENST00000427724 RAB44Q7Z6P3 723 aaPredicted RBP10.96□□□□□ -0.65
TCOF1-204ENST00000427724 SLFN11Q7Z7L1 901 aa10.96□□□□□ -0.65
TCOF1-204ENST00000427724 C12orf76Q8N812 135 aaPredicted RBP10.96□□□□□ -0.65
TCOF1-204ENST00000427724 PPM1NQ8N819 430 aa10.96□□□□□ -0.65
TCOF1-204ENST00000427724 KLHL23Q8NBE8 558 aa10.96□□□□□ -0.65
TCOF1-204ENST00000427724 PDZD8Q8NEN9 1154 aa10.96□□□□□ -0.65
TCOF1-204ENST00000427724 FEZF2Q8TBJ5 459 aa10.96□□□□□ -0.65
TCOF1-204ENST00000427724 CELF6Q96J87 481 aaKnown RBP10.96□□□□□ -0.65
TCOF1-204ENST00000427724 MAF1Q9H063 256 aa10.96□□□□□ -0.65
TCOF1-204ENST00000427724 KDM4CQ9H3R0 1056 aa10.96□□□□□ -0.65
TCOF1-204ENST00000427724 CFAP97Q9P2B7 532 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms