RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 NUF2Q9BZD4 464 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 KLC2Q9H0B6 622 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 VCXQ9H320 206 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 ST6GALNAC4Q9H4F1 302 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 STK32BQ9NY57 414 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 DDX56Q9NY93 547 aaKnown RBP8.92□□□□□ -0.98
USP40-203ENST00000427112 TUBGCP4Q9UGJ1 667 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 RPS6KL1Q9Y6S9 549 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 KIAA1217Q5T5P2 1943 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 SPATA31C2B4DYI2 1134 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 FOXD2O60548 495 aaPredicted RBP8.92□□□□□ -0.98
USP40-203ENST00000427112 CYP2C8P10632 490 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 RAG1P15918 1043 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 MUTP22033 750 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 ARL2P36404 184 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 NUDT2P50583 147 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 ACVR2BQ13705 512 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 NRF1Q16656 503 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 PITRM1Q5JRX3 1037 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 HEATR6Q6AI08 1181 aaKnown RBP8.92□□□□□ -0.98
USP40-203ENST00000427112 SATL1Q86VE3 508 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 ATP2A3Q93084 1043 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 CATSPER2Q96P56 530 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 RNF157Q96PX1 679 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 LIN28AQ9H9Z2 209 aaKnown RBP8.92□□□□□ -0.98
USP40-203ENST00000427112 PDLIM7Q9NR12 457 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 TTC24A2A3L6 582 aaPredicted RBP8.92□□□□□ -0.98
USP40-203ENST00000427112 HMX2A2RU54 273 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 SLC15A5A6NIM6 579 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 RFPL1O75677 317 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 SEC24DO94855 1032 aaPredicted RBP8.92□□□□□ -0.98
USP40-203ENST00000427112 HSPA4LO95757 839 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 ABHD2P08910 425 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 SRGAP2BP0DMP2 458 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 INSRRP14616 1297 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 SLC1A6P48664 564 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 HIC1Q14526 733 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 PDK1Q15118 436 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 PARP6Q2NL67 630 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 MZB1Q8WU39 189 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 SEPT1Q8WYJ6 367 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 INPP5DQ92835 1189 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 ZNF778Q96MU6 729 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 ZNF184Q99676 751 aaPredicted RBP8.92□□□□□ -0.98
USP40-203ENST00000427112 SYBUQ9NX95 663 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 GMPR2Q9P2T1 348 aaKnown RBP8.92□□□□□ -0.98
USP40-203ENST00000427112 SLC39A10Q9ULF5 831 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 APOBEC2Q9Y235 224 aaKnown RBP8.92□□□□□ -0.98
USP40-203ENST00000427112 MTO1Q9Y2Z2 717 aaKnown RBP8.92□□□□□ -0.98
USP40-203ENST00000427112 PLLPQ9Y342 182 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 UNC80Q8N2C7 3258 aa8.92□□□□□ -0.98
USP40-203ENST00000427112 ATP5HO75947 161 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 LTFP02788 710 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 RARBP10826 455 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 POU5F1BQ06416 359 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 SOWAHAQ2M3V2 549 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 CYP2R1Q6VVX0 501 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 ZNF354CQ86Y25 554 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 WDR49Q8IV35 697 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 RIBC1Q8N443 379 aaPredicted RBP8.91□□□□□ -0.98
USP40-203ENST00000427112 DIS3LQ8TF46 1054 aaKnown RBP8.91□□□□□ -0.98
USP40-203ENST00000427112 HASPINQ8TF76 798 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 SKA1Q96BD8 255 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 MFSD3Q96ES6 412 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 POPDC2Q9HBU9 364 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 PCDH18Q9HCL0 1135 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 BATF3Q9NR55 127 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 ADAMTS6Q9UKP5 1117 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 LRRC42Q9Y546 428 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 TEX264Q9Y6I9 313 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 COL4A5P29400 1685 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 ATP6AP2A0A1C7CYW4 349 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 BUD23O43709 281 aaKnown RBP8.91□□□□□ -0.98
USP40-203ENST00000427112 ZC3H11AO75152 810 aaKnown RBP eCLIP8.91□□□□□ -0.98
USP40-203ENST00000427112 TCEA3O75764 348 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 ATP6AP2O75787 350 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 APOEP02649 317 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 RXRBP28702 533 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 COG7P83436 770 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 MAP7D1Q3KQU3 841 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 SPDYAQ5MJ70 313 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 CERCAMQ5T4B2 595 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 ARHGAP17Q68EM7 881 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 FRMD7Q6ZUT3 714 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 TTC30AQ86WT1 665 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 RYBPQ8N488 228 aaPredicted RBP8.91□□□□□ -0.98
USP40-203ENST00000427112 PCDH20Q8N6Y1 951 aaKnown RBP8.91□□□□□ -0.98
USP40-203ENST00000427112 ZNF781Q8N8C0 355 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 COLGALT1Q8NBJ5 622 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 GDPD5Q8WTR4 605 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 NAT14Q8WUY8 206 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 OR52B2Q96RD2 323 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 RHOBTB2Q9BYZ6 727 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 PIF1Q9H611 641 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 COPS7BQ9H9Q2 264 aaPredicted RBP8.91□□□□□ -0.98
USP40-203ENST00000427112 PLAC1Q9HBJ0 212 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 USP29Q9HBJ7 922 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 TXNRD2Q9NNW7 524 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 SENP1Q9P0U3 644 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 KLHL8Q9P2G9 620 aaPredicted RBP8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms