RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 SKIDA1Q1XH10 827 aa27.41■■□□□ 1.98
LDB1-202ENST00000425280 C6orf118Q5T5N4 469 aa27.41■■□□□ 1.98
LDB1-202ENST00000425280 TLCD1Q96CP7 247 aa27.41■■□□□ 1.98
LDB1-202ENST00000425280 ROPN1BQ9BZX4 212 aaPredicted RBP27.41■■□□□ 1.98
LDB1-202ENST00000425280 ROPN1Q9HAT0 212 aaPredicted RBP27.41■■□□□ 1.98
LDB1-202ENST00000425280 NMUR1Q9HB89 426 aa27.41■■□□□ 1.98
LDB1-202ENST00000425280 RASGRF2O14827 1237 aa27.4■■□□□ 1.98
LDB1-202ENST00000425280 DCLK1O15075 740 aa27.4■■□□□ 1.98
LDB1-202ENST00000425280 ALOX15BO15296 676 aa27.4■■□□□ 1.98
LDB1-202ENST00000425280 HCAR3P49019 387 aa27.4■■□□□ 1.98
LDB1-202ENST00000425280 PAFAH1B3Q15102 231 aaKnown RBP27.4■■□□□ 1.98
LDB1-202ENST00000425280 BZW1Q7L1Q6 419 aaKnown RBP27.4■■□□□ 1.98
LDB1-202ENST00000425280 XPO7Q9UIA9 1087 aaKnown RBP27.4■■□□□ 1.98
LDB1-202ENST00000425280 SCML2Q9UQR0 700 aa27.4■■□□□ 1.98
LDB1-202ENST00000425280 A0A1W2PQH9 124 aa27.4■■□□□ 1.98
LDB1-202ENST00000425280 CPB1P15086 417 aa27.4■■□□□ 1.98
LDB1-202ENST00000425280 SLCO1A2P46721 670 aa27.4■■□□□ 1.98
LDB1-202ENST00000425280 KCNJ11Q14654 390 aa27.4■■□□□ 1.98
LDB1-202ENST00000425280 FNBP1LQ5T0N5 605 aa27.4■■□□□ 1.98
LDB1-202ENST00000425280 TTPALQ9BTX7 342 aa27.4■■□□□ 1.98
LDB1-202ENST00000425280 PHACTR1Q9C0D0 580 aa27.4■■□□□ 1.98
LDB1-202ENST00000425280 PLXNA3P51805 1871 aa27.39■■□□□ 1.98
LDB1-202ENST00000425280 HACD1B0YJ81 288 aa27.39■■□□□ 1.98
LDB1-202ENST00000425280 H7C4K7 107 aa27.39■■□□□ 1.98
LDB1-202ENST00000425280 IRAK2O43187 625 aa27.39■■□□□ 1.98
LDB1-202ENST00000425280 CLTBP09497 229 aa27.39■■□□□ 1.98
LDB1-202ENST00000425280 ATP1A2P50993 1020 aa27.39■■□□□ 1.98
LDB1-202ENST00000425280 ARL4CP56559 192 aa27.39■■□□□ 1.98
LDB1-202ENST00000425280 TPI1P60174 286 aa27.39■■□□□ 1.98
LDB1-202ENST00000425280 PDIA2Q13087 525 aaKnown RBP27.39■■□□□ 1.98
LDB1-202ENST00000425280 HP1BP3Q5SSJ5 553 aaPredicted RBP27.39■■□□□ 1.98
LDB1-202ENST00000425280 CCDC110Q8TBZ0 833 aa27.39■■□□□ 1.98
LDB1-202ENST00000425280 TFB1MQ8WVM0 346 aaKnown RBP27.39■■□□□ 1.98
LDB1-202ENST00000425280 RNF34Q969K3 372 aa27.39■■□□□ 1.98
LDB1-202ENST00000425280 SMOC2Q9H3U7 446 aa27.39■■□□□ 1.98
LDB1-202ENST00000425280 RAB6BQ9NRW1 208 aa27.39■■□□□ 1.98
LDB1-202ENST00000425280 SNX10Q9Y5X0 201 aa27.39■■□□□ 1.98
LDB1-202ENST00000425280 MTMR11A4FU01 709 aa27.39■■□□□ 1.97
LDB1-202ENST00000425280 VNN2O95498 520 aa27.39■■□□□ 1.97
LDB1-202ENST00000425280 ABHD2P08910 425 aa27.39■■□□□ 1.97
LDB1-202ENST00000425280 HPDP32754 393 aaPredicted RBP27.39■■□□□ 1.97
LDB1-202ENST00000425280 MAGOHP61326 146 aaKnown RBP27.39■■□□□ 1.97
LDB1-202ENST00000425280 GPR17Q13304 367 aa27.39■■□□□ 1.97
LDB1-202ENST00000425280 LONRF1Q17RB8 773 aa27.39■■□□□ 1.97
LDB1-202ENST00000425280 FBXO46Q6PJ61 603 aaPredicted RBP27.39■■□□□ 1.97
LDB1-202ENST00000425280 ZBED8Q8IZ13 594 aa27.39■■□□□ 1.97
LDB1-202ENST00000425280 NETO2Q8NC67 525 aa27.39■■□□□ 1.97
LDB1-202ENST00000425280 TTC25Q96NG3 672 aa27.39■■□□□ 1.97
LDB1-202ENST00000425280 OSER1Q9NX31 292 aa27.39■■□□□ 1.97
LDB1-202ENST00000425280 RGS16O15492 202 aaPredicted RBP27.38■■□□□ 1.97
LDB1-202ENST00000425280 BANF1O75531 89 aa27.38■■□□□ 1.97
LDB1-202ENST00000425280 GCATO75600 419 aa27.38■■□□□ 1.97
LDB1-202ENST00000425280 VAV1P15498 845 aa27.38■■□□□ 1.97
LDB1-202ENST00000425280 ERCC2P18074 760 aa27.38■■□□□ 1.97
LDB1-202ENST00000425280 USP46P62068 366 aa27.38■■□□□ 1.97
LDB1-202ENST00000425280 AUHQ13825 339 aaKnown RBP27.38■■□□□ 1.97
LDB1-202ENST00000425280 MSS51Q4VC12 460 aa27.38■■□□□ 1.97
LDB1-202ENST00000425280 RNF19BQ6ZMZ0 732 aa27.38■■□□□ 1.97
LDB1-202ENST00000425280 ANKS3Q6ZW76 656 aa27.38■■□□□ 1.97
LDB1-202ENST00000425280 CASP10Q92851 521 aa27.38■■□□□ 1.97
LDB1-202ENST00000425280 FBXO44Q9H4M3 255 aa27.38■■□□□ 1.97
LDB1-202ENST00000425280 CWH43Q9H720 699 aa27.38■■□□□ 1.97
LDB1-202ENST00000425280 OR12D3Q9UGF7 316 aa27.38■■□□□ 1.97
LDB1-202ENST00000425280 DYNC1LI1Q9Y6G9 523 aaKnown RBP27.38■■□□□ 1.97
LDB1-202ENST00000425280 CHADO15335 359 aa27.37■■□□□ 1.97
LDB1-202ENST00000425280 SOAT2O75908 522 aa27.37■■□□□ 1.97
LDB1-202ENST00000425280 GJA8P48165 433 aa27.37■■□□□ 1.97
LDB1-202ENST00000425280 HEATR6Q6AI08 1181 aaKnown RBP27.37■■□□□ 1.97
LDB1-202ENST00000425280 PRSS55Q6UWB4 352 aaPredicted RBP27.37■■□□□ 1.97
LDB1-202ENST00000425280 MON1AQ86VX9 555 aa27.37■■□□□ 1.97
LDB1-202ENST00000425280 CCDC13Q8IYE1 715 aa27.37■■□□□ 1.97
LDB1-202ENST00000425280 LGMNQ99538 433 aa27.37■■□□□ 1.97
LDB1-202ENST00000425280 ARHGEF38Q9NXL2 777 aa27.37■■□□□ 1.97
LDB1-202ENST00000425280 IL37Q9NZH6 218 aa27.37■■□□□ 1.97
LDB1-202ENST00000425280 SFMBT1Q9UHJ3 866 aa27.37■■□□□ 1.97
LDB1-202ENST00000425280 SLC27A5Q9Y2P5 690 aa27.37■■□□□ 1.97
LDB1-202ENST00000425280 COL4A6Q14031 1691 aa27.37■■□□□ 1.97
LDB1-202ENST00000425280 C5orf60A6NFR6 353 aa27.37■■□□□ 1.97
LDB1-202ENST00000425280 E7ESA3 106 aa27.37■■□□□ 1.97
LDB1-202ENST00000425280 EFEMP2O95967 443 aa27.37■■□□□ 1.97
LDB1-202ENST00000425280 RFC2P35250 354 aa27.37■■□□□ 1.97
LDB1-202ENST00000425280 ALDH7A1P49419 539 aaKnown RBP27.37■■□□□ 1.97
LDB1-202ENST00000425280 MFSD5Q6N075 450 aa27.37■■□□□ 1.97
LDB1-202ENST00000425280 SPPL2BQ8TCT7 592 aa27.37■■□□□ 1.97
LDB1-202ENST00000425280 GPR152Q8TDT2 470 aa27.37■■□□□ 1.97
LDB1-202ENST00000425280 ARMC5Q96C12 935 aa27.37■■□□□ 1.97
LDB1-202ENST00000425280 CRISPLD1Q9H336 500 aa27.37■■□□□ 1.97
LDB1-202ENST00000425280 EIF3HO15372 352 aaKnown RBP eCLIP27.36■■□□□ 1.97
LDB1-202ENST00000425280 SHOX2O60902 331 aaPredicted RBP27.36■■□□□ 1.97
LDB1-202ENST00000425280 TCEA3O75764 348 aa27.36■■□□□ 1.97
LDB1-202ENST00000425280 ZNF135P52742 658 aaPredicted RBP27.36■■□□□ 1.97
LDB1-202ENST00000425280 PRKD1Q15139 912 aaPredicted RBP27.36■■□□□ 1.97
LDB1-202ENST00000425280 LRRC26Q2I0M4 334 aa27.36■■□□□ 1.97
LDB1-202ENST00000425280 C4orf22Q6V702 233 aa27.36■■□□□ 1.97
LDB1-202ENST00000425280 HTR3CQ8WXA8 447 aa27.36■■□□□ 1.97
LDB1-202ENST00000425280 EPAS1Q99814 870 aa27.36■■□□□ 1.97
LDB1-202ENST00000425280 CAPS2Q9BXY5 557 aa27.36■■□□□ 1.97
LDB1-202ENST00000425280 NUDT5Q9UKK9 219 aa27.36■■□□□ 1.97
LDB1-202ENST00000425280 NR2E3Q9Y5X4 410 aa27.36■■□□□ 1.97
LDB1-202ENST00000425280 MSI1O43347 362 aaKnown RBP27.36■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms