RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 CCND1P24385 295 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 CYP2F1P24903 491 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 EPHB2P29323 1055 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 HDAC4P56524 1084 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 UBXN11Q5T124 520 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 APBB1IPQ7Z5R6 666 aaPredicted RBP11.03□□□□□ -0.64
CUX1-205ENST00000425244 SLC26A11Q86WA9 606 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 NETO2Q8NC67 525 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 FAM210AQ96ND0 272 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 VPS11Q9H270 941 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 UGT1A7Q9HAW7 530 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 UGT1A10Q9HAW8 530 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 UGT1A8Q9HAW9 530 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 TTLL3Q9Y4R7 772 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 NME7Q9Y5B8 376 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 NUMBLQ9Y6R0 609 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 CCDC195A0A1B0GUA6 201 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 CFAP69A5D8W1 941 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 C2CD2LO14523 706 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 TSHRP16473 764 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 TGM2P21980 687 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 ELF1P32519 619 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 SMAD1Q15797 465 aaKnown RBP11.03□□□□□ -0.64
CUX1-205ENST00000425244 NAIF1Q69YI7 327 aaPredicted RBP11.03□□□□□ -0.64
CUX1-205ENST00000425244 CAND1Q86VP6 1230 aaKnown RBP11.03□□□□□ -0.64
CUX1-205ENST00000425244 ZNF276Q8N554 614 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 ZNF513Q8N8E2 541 aaPredicted RBP11.03□□□□□ -0.64
CUX1-205ENST00000425244 SMG8Q8ND04 991 aaKnown RBP11.03□□□□□ -0.64
CUX1-205ENST00000425244 SRPK1Q96SB4 655 aaKnown RBP11.03□□□□□ -0.64
CUX1-205ENST00000425244 TBC1D10AQ9BXI6 508 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 NRDE2Q9H7Z3 1164 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 POPDC2Q9HBU9 364 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 CYLDQ9NQC7 956 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 HEY2Q9UBP5 337 aa11.03□□□□□ -0.64
CUX1-205ENST00000425244 SYNJ2BP-COX16A0A087WUM0 186 aa11.02□□□□□ -0.64
CUX1-205ENST00000425244 SPAG6O75602 509 aa11.02□□□□□ -0.64
CUX1-205ENST00000425244 GABBR2O75899 941 aa11.02□□□□□ -0.64
CUX1-205ENST00000425244 METTL18O95568 372 aa11.02□□□□□ -0.64
CUX1-205ENST00000425244 AXLP30530 894 aa11.02□□□□□ -0.64
CUX1-205ENST00000425244 MLH1P40692 756 aa11.02□□□□□ -0.64
CUX1-205ENST00000425244 SERPINB4P48594 390 aa11.02□□□□□ -0.64
CUX1-205ENST00000425244 NEK3P51956 506 aa11.02□□□□□ -0.64
CUX1-205ENST00000425244 ARFIP2P53365 341 aa11.02□□□□□ -0.64
CUX1-205ENST00000425244 IRX1P78414 480 aaPredicted RBP11.02□□□□□ -0.64
CUX1-205ENST00000425244 LPIN1Q14693 890 aa11.02□□□□□ -0.64
CUX1-205ENST00000425244 STILQ15468 1287 aa11.02□□□□□ -0.64
CUX1-205ENST00000425244 SLC45A4Q5BKX6 768 aa11.02□□□□□ -0.64
CUX1-205ENST00000425244 FBXO47Q5MNV8 452 aa11.02□□□□□ -0.64
CUX1-205ENST00000425244 TTC39BQ5VTQ0 682 aaPredicted RBP11.02□□□□□ -0.64
CUX1-205ENST00000425244 CDHR3Q6ZTQ4 885 aa11.02□□□□□ -0.64
CUX1-205ENST00000425244 CLNKQ7Z7G1 428 aa11.02□□□□□ -0.64
CUX1-205ENST00000425244 KIRREL3Q8IZU9 778 aa11.02□□□□□ -0.64
CUX1-205ENST00000425244 VPS52Q8N1B4 723 aa11.02□□□□□ -0.64
CUX1-205ENST00000425244 TTC39CQ8N584 583 aa11.02□□□□□ -0.64
CUX1-205ENST00000425244 KHSRPQ92945 711 aaKnown RBP eCLIP11.02□□□□□ -0.643e-7■■■■□ 19.9
CUX1-205ENST00000425244 MECRQ9BV79 373 aa11.02□□□□□ -0.64
CUX1-205ENST00000425244 FBXO6Q9NRD1 293 aaPredicted RBP11.02□□□□□ -0.64
CUX1-205ENST00000425244 FAM105AQ9NUU6 356 aa11.02□□□□□ -0.64
CUX1-205ENST00000425244 PIH1D1Q9NWS0 290 aaKnown RBP11.02□□□□□ -0.64
CUX1-205ENST00000425244 COX16Q9P0S2 106 aa11.02□□□□□ -0.64
CUX1-205ENST00000425244 KANSL3Q9P2N6 904 aa11.02□□□□□ -0.64
CUX1-205ENST00000425244 C15orf41Q9Y2V0 281 aa11.02□□□□□ -0.64
CUX1-205ENST00000425244 SCN1AP35498 2009 aa11.02□□□□□ -0.65
CUX1-205ENST00000425244 ARVCFO00192 962 aa11.02□□□□□ -0.65
CUX1-205ENST00000425244 DPYSL4O14531 572 aa11.02□□□□□ -0.65
CUX1-205ENST00000425244 GPR182O15218 404 aa11.02□□□□□ -0.65
CUX1-205ENST00000425244 MGEA5O60502 916 aa11.02□□□□□ -0.65
CUX1-205ENST00000425244 KRT37O76014 449 aa11.02□□□□□ -0.65
CUX1-205ENST00000425244 LBX1P52954 281 aa11.02□□□□□ -0.65
CUX1-205ENST00000425244 CLNS1AP54105 237 aaKnown RBP11.02□□□□□ -0.65
CUX1-205ENST00000425244 MGAT3Q09327 533 aa11.02□□□□□ -0.65
CUX1-205ENST00000425244 SLC9A4Q6AI14 798 aa11.02□□□□□ -0.65
CUX1-205ENST00000425244 MPP5Q8N3R9 675 aa11.02□□□□□ -0.65
CUX1-205ENST00000425244 SLC35F5Q8WV83 523 aa11.02□□□□□ -0.65
CUX1-205ENST00000425244 TEKT4Q8WW24 435 aa11.02□□□□□ -0.65
CUX1-205ENST00000425244 SLC7A6OSQ96CW6 309 aaPredicted RBP11.02□□□□□ -0.65
CUX1-205ENST00000425244 SNX27Q96L92 541 aa11.02□□□□□ -0.65
CUX1-205ENST00000425244 ADAM2Q99965 735 aa11.02□□□□□ -0.65
CUX1-205ENST00000425244 TMEM120AQ9BXJ8 343 aa11.02□□□□□ -0.65
CUX1-205ENST00000425244 SLC4A5Q9BY07 1137 aa11.02□□□□□ -0.65
CUX1-205ENST00000425244 INPP5FQ9Y2H2 1132 aa11.02□□□□□ -0.65
CUX1-205ENST00000425244 MFHAS1Q9Y4C4 1052 aa11.02□□□□□ -0.65
CUX1-205ENST00000425244 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.01□□□□□ -0.65
CUX1-205ENST00000425244 SMIM28A0A1B0GU29 152 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 H0Y3Z8 333 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 SNRPAP09012 282 aaKnown RBP11.01□□□□□ -0.65
CUX1-205ENST00000425244 SERPINB3P29508 390 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 GRIA1P42261 906 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 RASSF2P50749 326 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 PCBP1Q15365 356 aaKnown RBP eCLIP11.01□□□□□ -0.656e-6■■■■■ 34.5
CUX1-205ENST00000425244 MROH9Q5TGP6 573 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 BSPRYQ5W0U4 402 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 CASC4Q6P4E1 433 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 TRMT10BQ6PF06 316 aaKnown RBP11.01□□□□□ -0.65
CUX1-205ENST00000425244 UNC5AQ6ZN44 842 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 TMEM110Q86TL2 294 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 CDKL3Q8IVW4 592 aaPredicted RBP11.01□□□□□ -0.65
CUX1-205ENST00000425244 FAM13CQ8NE31 585 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 ARMC2Q8NEN0 867 aa11.01□□□□□ -0.65
CUX1-205ENST00000425244 PRR11Q96HE9 360 aaPredicted RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms