RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 GUCY2DQ02846 1103 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 CALCOCO2Q13137 446 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 PTK6Q13882 451 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 BYSLQ13895 437 aaKnown RBP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 RAB33AQ14088 237 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 PPP2R5DQ14738 602 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 NAA30Q147X3 362 aaPredicted RBP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 LLGL1Q15334 1064 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 SIX1Q15475 284 aaPredicted RBP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 CCNG2Q16589 344 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 DDR2Q16832 855 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 ZC3H12AQ5D1E8 599 aaKnown RBP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 C10orf120Q5SQS8 335 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 SH3PXD2AQ5TCZ1 1133 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 SYPL2Q5VXT5 272 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 PLPP4Q5VZY2 271 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 EMBQ6PCB8 327 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 DRICH1Q6PGQ1 229 aaPredicted RBP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 RSPO2Q6UXX9 243 aaPredicted RBP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 CCDC149Q6ZUS6 474 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 CYP4V2Q6ZWL3 525 aaPredicted RBP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 PDZD4Q76G19 769 aaPredicted RBP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 C16orf59Q7L2K0 433 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 GSTA5Q7RTV2 222 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 TAS1R1Q7RTX1 841 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 TMC7Q7Z402 723 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 BNIPLQ7Z465 357 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 MTERF4Q7Z6M4 381 aaKnown RBP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 ARFGAP1Q8N6T3 406 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 CCDC89Q8N998 374 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 KLHL23Q8NBE8 558 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 CMASQ8NFW8 434 aaPredicted RBP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 ZNF461Q8TAF7 563 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 ADAM32Q8TC27 787 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 C1orf54Q8WWF1 131 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 NDRG1Q92597 394 aaKnown RBP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 SLCO2A1Q92959 643 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 NKD2Q969F2 451 aaPredicted RBP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 NT5C3BQ969T7 300 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 FAF2Q96CS3 445 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 TRMT2BQ96GJ1 504 aaKnown RBP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 ABHD8Q96I13 439 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 ZNF512Q96ME7 567 aaPredicted RBP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 KCTD15Q96SI1 283 aaPredicted RBP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 TCF25Q9BQ70 676 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 CLSTN3Q9BQT9 956 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 TRIM51Q9BSJ1 452 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 LRRC1Q9BTT6 524 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 PARD6BQ9BYG5 372 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 LRRC19Q9H756 370 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 RXFP1Q9HBX9 757 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 PCDH9Q9HC56 1237 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 MTRF1LQ9UGC7 380 aaKnown RBP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 FBXW11Q9UKB1 542 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 RAB21Q9UL25 225 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 FZD10Q9ULW2 581 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 MAGED2Q9UNF1 606 aaPredicted RBP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 TCRBV7S2A1N4TA0A589 114 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 LCHNA4D1U4 455 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 LINC01553A4QN01 128 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 CCDC85CA6NKD9 419 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 C3orf70A6NLC5 250 aaPredicted RBP6.17□□□□□ -1.42
HMGB3-202ENST00000419110 SGK1O00141 431 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 PPP1R12AO14974 1030 aaPredicted RBP6.17□□□□□ -1.42
HMGB3-202ENST00000419110 TEX28O15482 410 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 DAPK3O43293 454 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 MSI1O43347 362 aaKnown RBP6.17□□□□□ -1.42
HMGB3-202ENST00000419110 CREB3O43889 395 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 MFSD11O43934 449 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 STK10O94804 968 aaKnown RBP6.17□□□□□ -1.42
HMGB3-202ENST00000419110 ABLIM3O94929 683 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 CSPG5O95196 566 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 MOCS2O96007 188 aaPredicted RBP6.17□□□□□ -1.42
HMGB3-202ENST00000419110 FYNP06241 537 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 RB1P06400 928 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 ITGAVP06756 1048 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 C8AP07357 584 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 CD48P09326 243 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 RARGP13631 454 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 GOT1P17174 413 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 ACTN2P35609 894 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 PPP3CCP48454 512 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 CXCR3P49682 368 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 TUBP50607 506 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 ARSEP51690 589 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 ATXN1P54253 815 aaKnown RBP6.17□□□□□ -1.42
HMGB3-202ENST00000419110 TBX4P57082 545 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 EIF3EP60228 445 aaKnown RBP6.17□□□□□ -1.42
HMGB3-202ENST00000419110 USP46P62068 366 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 PITX1P78337 314 aaPredicted RBP6.17□□□□□ -1.42
HMGB3-202ENST00000419110 SLC7A5Q01650 507 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 TWF1Q12792 350 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 EFEMP1Q12805 493 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 TAF10Q12962 218 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 SNX1Q13596 522 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 NOMO1Q15155 1222 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 TRIP4Q15650 581 aaPredicted RBP6.17□□□□□ -1.42
HMGB3-202ENST00000419110 RAB30Q15771 203 aa6.17□□□□□ -1.42
HMGB3-202ENST00000419110 CA9Q16790 459 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms