RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 CTNNAL1Q9UBT7 734 aa2.79□□□□□ -1.96
MCF2-204ENST00000414978 TRPS1Q9UHF7 1281 aa2.79□□□□□ -1.96
MCF2-204ENST00000414978 MTO1Q9Y2Z2 717 aaKnown RBP2.79□□□□□ -1.96
MCF2-204ENST00000414978 RLFQ13129 1914 aa2.79□□□□□ -1.96
MCF2-204ENST00000414978 ROCK2O75116 1388 aaKnown RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 TRIM43BA6NCK2 446 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 CLCA1A8K7I4 914 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 PIAS2O75928 621 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 DNAJB5O75953 348 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 HSPA4LO95757 839 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 PTMAP06454 111 aaKnown RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 EPHA5P54756 1037 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 HERVK_113P62684 666 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 ARHGEF6Q15052 776 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 CR1LQ2VPA4 569 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 VWA3BQ502W6 1294 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 GALNT18Q6P9A2 607 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 TRMT10BQ6PF06 316 aaKnown RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 ABRAXAS1Q6UWZ7 409 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 MFSD6Q6ZSS7 791 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 NUP54Q7Z3B4 507 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 USP37Q86T82 979 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 ZC3H18Q86VM9 953 aaKnown RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 TP53INP2Q8IXH6 220 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 VGLL2Q8N8G2 317 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 ZNF480Q8WV37 535 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 LINC01599Q8WXQ3 324 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 TRIM43Q96BQ3 446 aaPredicted RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 ZNF764Q96H86 408 aaPredicted RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 C1orf74Q96LT6 269 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 YTHDC1Q96MU7 727 aaKnown RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 C7orf26Q96N11 449 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 JAKMIP1Q96N16 626 aaKnown RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 SLC46A1Q96NT5 459 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 TEX13AQ9BXU3 409 aaPredicted RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 ANKRD2Q9GZV1 360 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 RNF32Q9H0A6 362 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 WSB2Q9NYS7 404 aaPredicted RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 ADAMTS6Q9UKP5 1117 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 RCE1Q9Y256 329 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 PCDHB2Q9Y5E7 798 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 PHIPQ8WWQ0 1821 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 A0A0G2JMZ2 1700 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 PNMA6EA0A0J9YXQ4 647 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 OR2W5A6NFC9 320 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 ISM1B1AKI9 464 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 E7EVH7 732 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 IGF2BP3O00425 579 aaKnown RBP eCLIP2.78□□□□□ -1.96
MCF2-204ENST00000414978 RTCAO00442 366 aaKnown RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 PRSS23O95084 383 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 ANXA1P04083 346 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 ENO2P09104 434 aaPredicted RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 SLURP2P0DP57 97 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 SFTPCP11686 197 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 RARGP13631 454 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 PORP16435 677 aaPredicted RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 ATF7P17544 494 aaPredicted RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 MST1P26927 711 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 IL12RB1P42701 662 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 TNNT3P45378 269 aaPredicted RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 ARFIP1P53367 373 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 BPIFB4P59827 614 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 DOC2BQ14184 412 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 KIF22Q14807 665 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 RAB39AQ14964 217 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 MFSD14BQ5SR56 506 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 DEPDC1Q5TB30 811 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 FAXCQ5TGI0 409 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 RNF43Q68DV7 783 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 GALNT17Q6IS24 598 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 IL17RDQ8NFM7 739 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 DNAJB14Q8TBM8 379 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 PHOSPHO1Q8TCT1 267 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 IGDCC4Q8TDY8 1250 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 SH3RF3Q8TEJ3 882 aaPredicted RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 SNX33Q8WV41 574 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 MYLIPQ8WY64 445 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 SHISA4Q96DD7 197 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 MYCBPQ99417 103 aaPredicted RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 PLEKHA2Q9HB19 425 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 SAE1Q9UBE0 346 aaPredicted RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 BLOC1S6Q9UL45 172 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 A0A1W2PQF6 199 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 TNPO2O14787 897 aaKnown RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 SASH1O94885 1247 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 TGDSO95455 350 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 ERBB2P04626 1255 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 CKBP12277 381 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 PRKCHP24723 683 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 HOXD10P28358 340 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 ADORA2AP29274 412 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 CPA2P48052 419 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 AMPHP49418 695 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 HUNKP57058 714 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 SESN2P58004 480 aaPredicted RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 TLE2Q04725 743 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 CHRNDQ07001 517 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 PRPF4BQ13523 1007 aaKnown RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 CTXN3Q4LDR2 81 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 ZNF484Q5JVG2 852 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms