RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 PAGE1O75459 146 aa10.04□□□□□ -0.8
RIF1-202ENST00000414861 OLFM2O95897 454 aa10.04□□□□□ -0.8
RIF1-202ENST00000414861 CCR1P32246 355 aa10.04□□□□□ -0.8
RIF1-202ENST00000414861 ZXDBP98169 803 aa10.04□□□□□ -0.8
RIF1-202ENST00000414861 KLF1Q13351 362 aaPredicted RBP10.04□□□□□ -0.8
RIF1-202ENST00000414861 KRT81Q14533 505 aa10.04□□□□□ -0.8
RIF1-202ENST00000414861 PPP2R5DQ14738 602 aa10.04□□□□□ -0.8
RIF1-202ENST00000414861 SIX1Q15475 284 aaPredicted RBP10.04□□□□□ -0.8
RIF1-202ENST00000414861 LONRF2Q1L5Z9 754 aa10.04□□□□□ -0.8
RIF1-202ENST00000414861 TFDP3Q5H9I0 405 aa10.04□□□□□ -0.8
RIF1-202ENST00000414861 EFHC2Q5JST6 749 aa10.04□□□□□ -0.8
RIF1-202ENST00000414861 BRMS1LQ5PSV4 323 aa10.04□□□□□ -0.8
RIF1-202ENST00000414861 ARTNQ5T4W7 220 aa10.04□□□□□ -0.8
RIF1-202ENST00000414861 KLHDC10Q6PID8 442 aa10.04□□□□□ -0.8
RIF1-202ENST00000414861 POTEHQ6S545 545 aa10.04□□□□□ -0.8
RIF1-202ENST00000414861 ZNF572Q7Z3I7 529 aaPredicted RBP10.04□□□□□ -0.8
RIF1-202ENST00000414861 ARL14EPQ8N8R7 260 aaPredicted RBP10.04□□□□□ -0.8
RIF1-202ENST00000414861 MAB21L3Q8N8X9 362 aa10.04□□□□□ -0.8
RIF1-202ENST00000414861 WBP2Q969T9 261 aa10.04□□□□□ -0.8
RIF1-202ENST00000414861 LRCH3Q96II8 777 aa10.04□□□□□ -0.8
RIF1-202ENST00000414861 CDK5RAP1Q96SZ6 601 aaKnown RBP10.04□□□□□ -0.8
RIF1-202ENST00000414861 CDCA3Q99618 268 aaPredicted RBP10.04□□□□□ -0.8
RIF1-202ENST00000414861 APOL5Q9BWW9 433 aa10.04□□□□□ -0.8
RIF1-202ENST00000414861 RBM12Q9NTZ6 932 aaKnown RBP10.04□□□□□ -0.8
RIF1-202ENST00000414861 SMPD4Q9NXE4 827 aa10.04□□□□□ -0.8
RIF1-202ENST00000414861 XYLBO75191 536 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 GOT1P17174 413 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 PTPN2P17706 415 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 CDC25CP30307 473 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 PTPN7P35236 360 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 SEMA3BQ13214 749 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 PPP2R5EQ16537 467 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 KCTD19Q17RG1 926 aaPredicted RBP10.03□□□□□ -0.8
RIF1-202ENST00000414861 PABPC1LQ4VXU2 614 aaKnown RBP10.03□□□□□ -0.8
RIF1-202ENST00000414861 ODF2Q5BJF6 829 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 PRSS36Q5K4E3 855 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 PIK3R6Q5UE93 754 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 PDZD4Q76G19 769 aaPredicted RBP10.03□□□□□ -0.8
RIF1-202ENST00000414861 NOA1Q8NC60 698 aaKnown RBP10.03□□□□□ -0.8
RIF1-202ENST00000414861 SMG7Q92540 1137 aaKnown RBP10.03□□□□□ -0.8
RIF1-202ENST00000414861 MRPS31Q92665 395 aaKnown RBP10.03□□□□□ -0.8
RIF1-202ENST00000414861 FAM161BQ96MY7 647 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 FAM118BQ9BPY3 351 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 SFXN1Q9H9B4 322 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 GKN1Q9NS71 199 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 CWC15Q9P013 229 aaKnown RBP10.03□□□□□ -0.8
RIF1-202ENST00000414861 R3HDM2Q9Y2K5 976 aaKnown RBP10.03□□□□□ -0.8
RIF1-202ENST00000414861 SCAMP3O14828 347 aaKnown RBP10.03□□□□□ -0.8
RIF1-202ENST00000414861 CREB3O43889 395 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 PAPLNO95428 1278 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 POU2F2P09086 479 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 PAFAH1B1P43034 410 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 AIF1P55008 147 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 COPS2P61201 443 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 DYNLT1P63172 113 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 CKAP4Q07065 602 aaKnown RBP10.03□□□□□ -0.8
RIF1-202ENST00000414861 PDK2Q15119 407 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 TEAD2Q15562 447 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 ARL13BQ3SXY8 428 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 RARS2Q5T160 578 aaKnown RBP10.03□□□□□ -0.8
RIF1-202ENST00000414861 TADA2BQ86TJ2 420 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 PSTKQ8IV42 348 aaKnown RBP10.03□□□□□ -0.8
RIF1-202ENST00000414861 PQLC3Q8N755 202 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 EFHBQ8N7U6 833 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 SPATA4Q8NEY3 305 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 PCDH19Q8TAB3 1148 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 PPP2R3CQ969Q6 453 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 FAF2Q96CS3 445 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 CSPG4P5Q96PW8 444 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 GCNAQ96QF7 691 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 ZNF670Q9BS34 389 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 KLF16Q9BXK1 252 aaPredicted RBP10.03□□□□□ -0.8
RIF1-202ENST00000414861 RNF14Q9UBS8 474 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 DPP7Q9UHL4 492 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 NEU3Q9UQ49 428 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 MFHAS1Q9Y4C4 1052 aa10.03□□□□□ -0.8
RIF1-202ENST00000414861 KRIT1O00522 736 aa10.02□□□□□ -0.8
RIF1-202ENST00000414861 STC2O76061 302 aa10.02□□□□□ -0.8
RIF1-202ENST00000414861 IRF1P10914 325 aa10.02□□□□□ -0.8
RIF1-202ENST00000414861 MBL2P11226 248 aaPredicted RBP10.02□□□□□ -0.8
RIF1-202ENST00000414861 HDCP19113 662 aa10.02□□□□□ -0.8
RIF1-202ENST00000414861 RING1Q06587 406 aa10.02□□□□□ -0.8
RIF1-202ENST00000414861 ANKRD20A8PQ5CZ79 823 aa10.02□□□□□ -0.8
RIF1-202ENST00000414861 PRELID2Q8N945 189 aa10.02□□□□□ -0.8
RIF1-202ENST00000414861 ADAMTS19Q8TE59 1207 aa10.02□□□□□ -0.8
RIF1-202ENST00000414861 ING5Q8WYH8 240 aa10.02□□□□□ -0.8
RIF1-202ENST00000414861 ATG4AQ8WYN0 398 aa10.02□□□□□ -0.8
RIF1-202ENST00000414861 HAUS1Q96CS2 278 aa10.02□□□□□ -0.8
RIF1-202ENST00000414861 SLC46A2Q9BY10 475 aa10.02□□□□□ -0.8
RIF1-202ENST00000414861 SIK2Q9H0K1 926 aa10.02□□□□□ -0.8
RIF1-202ENST00000414861 SMG9Q9H0W8 520 aaKnown RBP10.02□□□□□ -0.8
RIF1-202ENST00000414861 ETNK2Q9NVF9 386 aa10.02□□□□□ -0.8
RIF1-202ENST00000414861 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.02□□□□□ -0.8
RIF1-202ENST00000414861 OR12D3Q9UGF7 316 aa10.02□□□□□ -0.8
RIF1-202ENST00000414861 HBS1LQ9Y450 684 aaKnown RBP10.02□□□□□ -0.8
RIF1-202ENST00000414861 CPQQ9Y646 472 aa10.02□□□□□ -0.8
RIF1-202ENST00000414861 HS3ST4Q9Y661 456 aa10.02□□□□□ -0.8
RIF1-202ENST00000414861 MTCH2Q9Y6C9 303 aa10.02□□□□□ -0.8
RIF1-202ENST00000414861 CTAGE15A4D2H0 777 aa10.02□□□□□ -0.81
RIF1-202ENST00000414861 CST8O60676 142 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms