RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 TMEM176AQ96HP8 235 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 ZFRQ96KR1 1074 aaKnown RBP5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 ZNF778Q96MU6 729 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 TUBGCP5Q96RT8 1024 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 TEX13BQ9BXU2 312 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 ZWILCHQ9H900 591 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 RAB6BQ9NRW1 208 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 CDH22Q9UJ99 828 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 EMCNQ9ULC0 261 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 PPM1HQ9ULR3 514 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 PSMD13Q9UNM6 376 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 PHF24Q9UPV7 400 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 RIPK3Q9Y572 518 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 CTDP1Q9Y5B0 961 aaPredicted RBP5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 PCDHB12Q9Y5F1 795 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 RAD54BQ9Y620 910 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 OTOFQ9HC10 1997 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 FAM170AA1A519 330 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 PRPSAP2O60256 369 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 RNASEH1O60930 286 aaKnown RBP5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 SIN3BO75182 1162 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 MICAL2O94851 1124 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 PROCP04070 461 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 DESP17661 470 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 HADHAP40939 763 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 CHN2P52757 468 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 TNFAIP2Q03169 654 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 MSLNQ13421 630 aaPredicted RBP5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 SNAPC2Q13487 334 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 PCLAFQ15004 111 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 ZYXQ15942 572 aaKnown RBP5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 ARHGAP22Q7Z5H3 698 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 TMEM110Q86TL2 294 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 FBXW8Q8N3Y1 598 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 CPSF7Q8N684 471 aaKnown RBP5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 PPM1NQ8N819 430 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 FBXO27Q8NI29 283 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 NAT14Q8WUY8 206 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 CDKL2Q92772 493 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 GFM2Q969S9 779 aaKnown RBP5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 TMEM143Q96AN5 459 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 ELMO3Q96BJ8 720 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 OPTNQ96CV9 577 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 PCYT2Q99447 389 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 SORT1Q99523 831 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 THTPAQ9BU02 230 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 SLC4A5Q9BY07 1137 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 C20orf27Q9GZN8 174 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 ZNF696Q9H7X3 374 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 PCDH18Q9HCL0 1135 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 ATXN10Q9UBB4 475 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 SAE1Q9UBE0 346 aaPredicted RBP5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 SIX4Q9UIU6 781 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 MID2Q9UJV3 735 aa5.92□□□□□ -1.46
CCDC88A-203ENST00000412148 H3BNX3 289 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 WNT10BO00744 389 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 PEX14O75381 377 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 DGKIO75912 1065 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 FARP2O94887 1054 aaPredicted RBP5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 ZBED1O96006 694 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 PRKCGP05129 697 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 PRKCBP05771 671 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 CYP2C8P10632 490 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 MCF2P10911 925 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 VCLP18206 1134 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 PGAM1P18669 254 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 RPS12P25398 132 aaKnown RBP5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 TNFSF9P41273 254 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 SLC1A6P48664 564 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 IDH3AP50213 366 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 CDH6P55285 790 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 SESN3P58005 492 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 SMTNL2Q2TAL5 461 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 TBC1D10BQ4KMP7 808 aaPredicted RBP5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 TMEM259Q4ZIN3 620 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 FASTKD1Q53R41 847 aaKnown RBP5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 SH3D19Q5HYK7 790 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 RNF111Q6ZNA4 994 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 KRT27Q7Z3Y8 459 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 KLHDC8BQ8IXV7 354 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 NDUFAF2Q8N183 169 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 ADCY4Q8NFM4 1077 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 DTX3LQ8TDB6 740 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 TRPC4APQ8TEL6 797 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 TOP1MTQ969P6 601 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 DGCR14Q96DF8 476 aaKnown RBP5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 DUS3LQ96G46 650 aaKnown RBP5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 KLF6Q99612 283 aaPredicted RBP5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 ADPGKQ9BRR6 497 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 MCMBPQ9BTE3 642 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 INO80BQ9C086 356 aaPredicted RBP5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 C12orf65Q9H3J6 166 aaKnown RBP5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 Q9H521 79 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 ZNF385DQ9H6B1 395 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 STAU2Q9NUL3 570 aaKnown RBP eCLIP5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 PCMTD2Q9NV79 361 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 ARMCX1Q9P291 453 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 KLHL42Q9P2K6 505 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 STK39Q9UEW8 545 aa5.91□□□□□ -1.46
CCDC88A-203ENST00000412148 BARX2Q9UMQ3 279 aaPredicted RBP5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms