RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 PTK2Q05397 1052 aa19.84■□□□□ 0.77
SF3A1-202ENST00000411423 EIF4EBP2Q13542 120 aaPredicted RBP19.84■□□□□ 0.77
SF3A1-202ENST00000411423 PTPN20Q4JDL3 420 aa19.84■□□□□ 0.77
SF3A1-202ENST00000411423 CCDC183Q5T5S1 534 aa19.84■□□□□ 0.77
SF3A1-202ENST00000411423 ADGRF1Q5T601 910 aa19.84■□□□□ 0.77
SF3A1-202ENST00000411423 HMGB4Q8WW32 186 aa19.84■□□□□ 0.77
SF3A1-202ENST00000411423 SORCS1Q8WY21 1168 aa19.84■□□□□ 0.77
SF3A1-202ENST00000411423 GABRG3Q99928 467 aa19.84■□□□□ 0.77
SF3A1-202ENST00000411423 SLC6A17Q9H1V8 727 aa19.84■□□□□ 0.77
SF3A1-202ENST00000411423 LHX5Q9H2C1 402 aa19.84■□□□□ 0.77
SF3A1-202ENST00000411423 SMOC1Q9H4F8 434 aa19.84■□□□□ 0.77
SF3A1-202ENST00000411423 CD93Q9NPY3 652 aa19.84■□□□□ 0.77
SF3A1-202ENST00000411423 SEMA4GQ9NTN9 838 aa19.84■□□□□ 0.77
SF3A1-202ENST00000411423 MBD1Q9UIS9 605 aaPredicted RBP19.84■□□□□ 0.77
SF3A1-202ENST00000411423 GOLGA6L22H0YM25 854 aa19.83■□□□□ 0.77
SF3A1-202ENST00000411423 ACSL4O60488 711 aa19.83■□□□□ 0.77
SF3A1-202ENST00000411423 CYBBP04839 570 aa19.83■□□□□ 0.77
SF3A1-202ENST00000411423 HLA-FP30511 346 aa19.83■□□□□ 0.77
SF3A1-202ENST00000411423 ID4P47928 161 aa19.83■□□□□ 0.77
SF3A1-202ENST00000411423 RING1Q06587 406 aa19.83■□□□□ 0.77
SF3A1-202ENST00000411423 MPPE1Q53F39 396 aa19.83■□□□□ 0.77
SF3A1-202ENST00000411423 PIK3R6Q5UE93 754 aa19.83■□□□□ 0.77
SF3A1-202ENST00000411423 RNF43Q68DV7 783 aa19.83■□□□□ 0.77
SF3A1-202ENST00000411423 SASS6Q6UVJ0 657 aa19.83■□□□□ 0.77
SF3A1-202ENST00000411423 FAM183BPQ6ZVS7 135 aa19.83■□□□□ 0.77
SF3A1-202ENST00000411423 BEND5Q7L4P6 421 aa19.83■□□□□ 0.77
SF3A1-202ENST00000411423 APTXQ7Z2E3 356 aaKnown RBP19.83■□□□□ 0.77
SF3A1-202ENST00000411423 CHPFQ8IZ52 775 aa19.83■□□□□ 0.77
SF3A1-202ENST00000411423 DDX1Q92499 740 aaKnown RBP19.83■□□□□ 0.77
SF3A1-202ENST00000411423 GOLGA1Q92805 767 aa19.83■□□□□ 0.77
SF3A1-202ENST00000411423 PPP1R13BQ96KQ4 1090 aa19.83■□□□□ 0.77
SF3A1-202ENST00000411423 POPDC2Q9HBU9 364 aa19.83■□□□□ 0.77
SF3A1-202ENST00000411423 POLMQ9NP87 494 aaPredicted RBP19.83■□□□□ 0.77
SF3A1-202ENST00000411423 ANO10Q9NW15 660 aa19.83■□□□□ 0.77
SF3A1-202ENST00000411423 LAMA1P25391 3075 aa19.82■□□□□ 0.76
SF3A1-202ENST00000411423 SPTBN4Q9H254 2564 aa19.82■□□□□ 0.76
SF3A1-202ENST00000411423 GRAP2O75791 330 aa19.82■□□□□ 0.76
SF3A1-202ENST00000411423 MBD3O95983 291 aa19.82■□□□□ 0.76
SF3A1-202ENST00000411423 CYP11B1P15538 503 aa19.82■□□□□ 0.76
SF3A1-202ENST00000411423 P2RY2P41231 377 aa19.82■□□□□ 0.76
SF3A1-202ENST00000411423 IL12RB1P42701 662 aa19.82■□□□□ 0.76
SF3A1-202ENST00000411423 STX1AQ16623 288 aa19.82■□□□□ 0.76
SF3A1-202ENST00000411423 RSPO4Q2I0M5 234 aaPredicted RBP19.82■□□□□ 0.76
SF3A1-202ENST00000411423 MAP7D1Q3KQU3 841 aa19.82■□□□□ 0.76
SF3A1-202ENST00000411423 OLFML1Q6UWY5 402 aa19.82■□□□□ 0.76
SF3A1-202ENST00000411423 NUDT18Q6ZVK8 323 aa19.82■□□□□ 0.76
SF3A1-202ENST00000411423 TRMT11Q7Z4G4 463 aaKnown RBP19.82■□□□□ 0.76
SF3A1-202ENST00000411423 NOP9Q86U38 636 aaKnown RBP19.82■□□□□ 0.76
SF3A1-202ENST00000411423 IPO4Q8TEX9 1081 aaKnown RBP19.82■□□□□ 0.76
SF3A1-202ENST00000411423 TMA16Q96EY4 203 aaKnown RBP19.82■□□□□ 0.76
SF3A1-202ENST00000411423 SERPINB11Q96P15 392 aa19.82■□□□□ 0.76
SF3A1-202ENST00000411423 SLC2A13Q96QE2 648 aa19.82■□□□□ 0.76
SF3A1-202ENST00000411423 ADAM33Q9BZ11 813 aa19.82■□□□□ 0.76
SF3A1-202ENST00000411423 NUCKS1Q9H1E3 243 aaKnown RBP19.82■□□□□ 0.76
SF3A1-202ENST00000411423 RXFP3Q9NSD7 469 aa19.82■□□□□ 0.76
SF3A1-202ENST00000411423 CALCOCO1Q9P1Z2 691 aa19.82■□□□□ 0.76
SF3A1-202ENST00000411423 THAP10Q9P2Z0 257 aaPredicted RBP19.82■□□□□ 0.76
SF3A1-202ENST00000411423 TLR6Q9Y2C9 796 aa19.82■□□□□ 0.76
SF3A1-202ENST00000411423 SIK3Q9Y2K2 1263 aa19.82■□□□□ 0.76
SF3A1-202ENST00000411423 STON1Q9Y6Q2 735 aa19.82■□□□□ 0.76
SF3A1-202ENST00000411423 MUC22E2RYF6 1773 aaPredicted RBP19.82■□□□□ 0.76
SF3A1-202ENST00000411423 SPAG17Q6Q759 2223 aa19.82■□□□□ 0.76
SF3A1-202ENST00000411423 SDK1Q7Z5N4 2213 aa19.82■□□□□ 0.76
SF3A1-202ENST00000411423 ABCA7Q8IZY2 2146 aa19.81■□□□□ 0.76
SF3A1-202ENST00000411423 F8VZ95 297 aa19.81■□□□□ 0.76
SF3A1-202ENST00000411423 IRAK2O43187 625 aa19.81■□□□□ 0.76
SF3A1-202ENST00000411423 SART1O43290 800 aaKnown RBP19.81■□□□□ 0.76
SF3A1-202ENST00000411423 GDF9O60383 454 aa19.81■□□□□ 0.76
SF3A1-202ENST00000411423 ALDH1A2O94788 518 aa19.81■□□□□ 0.76
SF3A1-202ENST00000411423 ZNF18P17022 549 aa19.81■□□□□ 0.76
SF3A1-202ENST00000411423 NDUFV2P19404 249 aa19.81■□□□□ 0.76
SF3A1-202ENST00000411423 COPB1P53618 953 aaKnown RBP19.81■□□□□ 0.76
SF3A1-202ENST00000411423 YWHAZP63104 245 aaKnown RBP19.81■□□□□ 0.76
SF3A1-202ENST00000411423 ENPP2Q13822 863 aa19.81■□□□□ 0.76
SF3A1-202ENST00000411423 SF3A2Q15428 464 aaKnown RBP19.81■□□□□ 0.76
SF3A1-202ENST00000411423 CSRP2Q16527 193 aa19.81■□□□□ 0.76
SF3A1-202ENST00000411423 USP39Q53GS9 565 aaKnown RBP19.81■□□□□ 0.76
SF3A1-202ENST00000411423 PLA2G2CQ5R387 149 aa19.81■□□□□ 0.76
SF3A1-202ENST00000411423 TAF3Q5VWG9 929 aa19.81■□□□□ 0.76
SF3A1-202ENST00000411423 NUGGCQ68CJ6 796 aa19.81■□□□□ 0.76
SF3A1-202ENST00000411423 PMS2CLQ68D20 193 aa19.81■□□□□ 0.76
SF3A1-202ENST00000411423 PRR23CQ6ZRP0 262 aa19.81■□□□□ 0.76
SF3A1-202ENST00000411423 ANKS1BQ7Z6G8 1248 aa19.81■□□□□ 0.76
SF3A1-202ENST00000411423 UNC45BQ8IWX7 931 aa19.81■□□□□ 0.76
SF3A1-202ENST00000411423 DEFB106AQ8N104 65 aa19.81■□□□□ 0.76
SF3A1-202ENST00000411423 LOXL4Q96JB6 756 aa19.81■□□□□ 0.76
SF3A1-202ENST00000411423 LMLNQ96KR4 655 aa19.81■□□□□ 0.76
SF3A1-202ENST00000411423 DLL3Q9NYJ7 618 aa19.81■□□□□ 0.76
SF3A1-202ENST00000411423 LIMA1Q9UHB6 759 aaKnown RBP19.81■□□□□ 0.76
SF3A1-202ENST00000411423 CAPN9O14815 690 aa19.8■□□□□ 0.76
SF3A1-202ENST00000411423 TBL1XO60907 577 aa19.8■□□□□ 0.76
SF3A1-202ENST00000411423 LRP3O75074 770 aa19.8■□□□□ 0.76
SF3A1-202ENST00000411423 TRUB2O95900 331 aaKnown RBP19.8■□□□□ 0.76
SF3A1-202ENST00000411423 MOCS2O96007 188 aaPredicted RBP19.8■□□□□ 0.76
SF3A1-202ENST00000411423 GBP1P32455 592 aa19.8■□□□□ 0.76
SF3A1-202ENST00000411423 CDH5P33151 784 aaPredicted RBP19.8■□□□□ 0.76
SF3A1-202ENST00000411423 KRT9P35527 623 aa19.8■□□□□ 0.76
SF3A1-202ENST00000411423 MYL5Q02045 173 aa19.8■□□□□ 0.76
SF3A1-202ENST00000411423 TYRO3Q06418 890 aa19.8■□□□□ 0.76
SF3A1-202ENST00000411423 NNTQ13423 1086 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms